Best TWAS P=6.74e-10 · Best GWAS P=3.93e-09 conditioned to 0.000372
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | NTR | Blood | PARK7 | 0.02 | 0.01 | lasso | 3 | 0.01 | 1.4e-05 | 5.4 | 5.5 | 3.1e-08 | -0.39 | 0.02 | 0.98 | FALSE |
| 2 | ROSMAP | Brain Pre-frontal Cortex | RP11-431K24.1 | 0.16 | 0.16 | bslmm | 384 | 0.17 | 3.1e-21 | -5.6 | -6.1 | 8.5e-10 | 0.92 | 0.07 | 0.93 | FALSE |
| 3 | YFS | Blood | PARK7 | 0.08 | 0.11 | lasso | 6 | 0.11 | 4.4e-34 | 5.4 | 5.5 | 3.0e-08 | -0.38 | 0.16 | 0.84 | FALSE |
| 4 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ERRFI1 | 0.01 | 0.01 | blup | 27 | 0.00 | 4.3e-02 | 5.4 | -5.7 | 1.1e-08 | 0.39 | 0.01 | 0.78 | FALSE |
| 5 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PARK7 | 0.03 | 0.03 | enet | 3 | 0.02 | 1.3e-03 | 5.9 | 6.2 | 6.7e-10 | -0.43 | 0.00 | 0.94 | TRUE |
| 6 | The Cancer Genome Atlas | Lung Adenocarcinoma | PARK7 | 0.03 | 0.03 | lasso | 1 | 0.02 | 5.0e-03 | 5.4 | 5.4 | 5.3e-08 | -0.38 | 0.01 | 0.73 | FALSE |
| 7 | The Cancer Genome Atlas | Soft Tissue Sarcoma | VAMP3 | 0.11 | 0.07 | lasso | 4 | 0.05 | 7.5e-04 | 5.4 | -5.4 | 8.5e-08 | 0.26 | 0.00 | 0.98 | FALSE |