TWAS
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Traits
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Traits
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Trunk predicted mass
:
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→
chr3:195,279,119-196,666,059
Best TWAS P=1.23e-08 · Best GWAS P=9.69e-06 conditioned to 0.548
195.2M
195.4M
195.6M
195.8M
196M
196.2M
196.4M
196.6M
0
1
2
3
4
5
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Breast Mammary Tissue
SLC51A
0.28
0.06
lasso
6
0.14
1.3e-07
3.8
-5.7
1.2e-08
0.70
0.01
0.78
TRUE
3
The Cancer Genome Atlas
Soft Tissue Sarcoma
PCYT1A
0.12
0.05
blup
68
0.06
2.0e-04
4.3
-5.4
8.2e-08
0.40
0.01
0.51
FALSE
2
GTEx
Cells Transformed fibroblasts
SLC51A
0.30
0.22
lasso
4
0.24
5.0e-18
3.8
-5.3
1.4e-07
0.45
0.05
0.58
FALSE