Best TWAS P=9.33e-12 · Best GWAS P=5e-11 conditioned to 0.0301
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | DCAF16 | 0.10 | 0.01 | enet | 6 | 0.02 | 4.7e-02 | -6.2 | 6.6 | 4.0e-11 | -0.81 | 0.05 | 0.78 | FALSE |
2 | GTEx | Breast Mammary Tissue | DCAF16 | 0.12 | 0.08 | lasso | 4 | 0.10 | 6.4e-06 | 4.1 | 5.3 | 1.1e-07 | -0.52 | 0.10 | 0.76 | FALSE |
3 | GTEx | Breast Mammary Tissue (Male) | DCAF16 | 0.24 | 0.03 | enet | 18 | -0.01 | 4.4e-01 | -6.3 | 6.8 | 9.3e-12 | -0.76 | 0.03 | 0.66 | TRUE |
4 | GTEx | Spleen | DCAF16 | 0.35 | 0.02 | lasso | 5 | 0.11 | 8.5e-04 | 3.9 | 5.9 | 4.7e-09 | -0.66 | 0.05 | 0.61 | FALSE |
5 | GTEx | Thyroid | DCAF16 | 0.11 | 0.02 | lasso | 5 | 0.03 | 2.3e-03 | 3.9 | 5.7 | 1.2e-08 | -0.54 | 0.20 | 0.65 | FALSE |
6 | ROSMAP | Brain Pre-frontal Cortex | DCAF16 | 0.04 | 0.02 | bslmm | 379 | 0.01 | 3.9e-02 | -6.3 | 5.8 | 6.2e-09 | -0.83 | 0.03 | 0.89 | FALSE |
7 | The Cancer Genome Atlas | Colon Adenocarcinoma | NCAPG | 0.08 | 0.04 | blup | 34 | 0.09 | 1.1e-05 | -6.3 | -5.5 | 4.7e-08 | 0.84 | 0.01 | 0.98 | FALSE |
8 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | NCAPG | 0.14 | 0.07 | lasso | 3 | 0.07 | 5.2e-08 | -6.3 | -6.2 | 7.7e-10 | 0.84 | 0.01 | 0.99 | FALSE |
9 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DCAF16 | 0.09 | 0.02 | lasso | 3 | 0.04 | 5.2e-05 | 4.1 | 6.3 | 2.3e-10 | -0.64 | 0.04 | 0.91 | FALSE |
10 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NCAPG | 0.02 | 0.03 | lasso | 1 | 0.02 | 9.0e-04 | -6.3 | -6.3 | 4.0e-10 | 0.88 | 0.01 | 0.85 | FALSE |
11 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DCAF16 | 0.04 | 0.04 | blup | 31 | 0.04 | 2.2e-05 | 3.9 | 5.6 | 1.9e-08 | -0.58 | 0.24 | 0.31 | FALSE |
12 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NCAPG | 0.02 | 0.02 | blup | 34 | 0.02 | 3.4e-03 | -6.0 | -5.5 | 4.0e-08 | 0.76 | 0.02 | 0.69 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | DCAF16 | 0.07 | 0.04 | blup | 31 | 0.07 | 4.9e-07 | 4.1 | 6.3 | 2.4e-10 | -0.65 | 0.18 | 0.73 | FALSE |