853 significantly associated models · 152 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 752566 | 2036263 | 5 | 1 | 1.3e-09 | 1.5e-11 | 1.6e-03 | 78 | PUSL1 |
2 | 1 | 18940380 | 20350374 | 1 | 1 | 1.5e-08 | 7.1e-10 | 1.7e-03 | 74 | PQLC2 |
3 | 1 | 26061266 | 27488299 | 2 | 1 | 8.8e-09 | 1.5e-07 | 2.8e-02 | 82 | DHDDS |
4 | 1 | 77464831 | 79041520 | 2 | 1 | 1.5e-07 | 2.8e-07 | 1.0e+00 | 100 | USP33 |
5 | 1 | 203793652 | 206329620 | 7 | 3 | 5.1e-23 | 1.3e-28 | 1.4e-06 | 81 | MDM4 RAB7L1 SLC26A9 |
6 | 2 | 42767044 | 44157441 | 1 | 1 | 1.9e-07 | 2.5e-12 | 2.2e-06 | 54 | AC010883.5 |
7 | 2 | 190689771 | 192091293 | 1 | 1 | 7.2e-08 | 3.5e-07 | 7.6e-02 | 88 | TMEM194B |
8 | 2 | 241805851 | 243048760 | 1 | 1 | 4.1e-08 | 2.4e-06 | 1.3e-01 | 90 | BOK |
9 | 3 | 49030828 | 50448632 | 1 | 1 | 1.2e-08 | 1.4e-04 | 2.6e-01 | 91 | RNF123 |
10 | 3 | 128788778 | 129284415 | 1 | 1 | 3.0e-08 | 8.6e-07 | 5.5e-01 | 98 | H1FX |
11 | 4 | 4774402 | 5270485 | 1 | 1 | 1.3e-09 | 3.2e-13 | 7.0e-07 | 54 | CYTL1 |
12 | 4 | 17104059 | 18507692 | 2 | 1 | 9.3e-12 | 5.0e-11 | 3.0e-02 | 89 | DCAF16 |
13 | 4 | 144230902 | 146788825 | 4 | 3 | 1.1e-30 | 3.0e-63 | 6.1e-24 | 64 | GYPA HHIP-AS1 OTUD4 |
14 | 4 | 169769793 | 170436564 | 1 | 1 | 1.2e-07 | 7.5e-07 | 1.8e-01 | 93 | SH3RF1 |
15 | 5 | 82684424 | 83258483 | 1 | 1 | 1.3e-08 | 4.1e-18 | 5.3e-11 | 43 | HAPLN1 |
16 | 5 | 147063674 | 148712150 | 2 | 2 | 5.7e-12 | 3.2e-15 | 6.9e-04 | 82 | FBXO38 |
17 | 5 | 156123995 | 157697754 | 1 | 1 | 8.6e-14 | 8.9e-13 | 2.4e-01 | 97 | ADAM19 |
18 | 6 | 34310476 | 36121375 | 5 | 2 | 2.0e-10 | 7.1e-10 | 1.2e-01 | 94 | C6orf106 ZNF76 |
19 | 6 | 108994161 | 110710018 | 8 | 1 | 2.9e-10 | 3.9e-09 | 5.9e-01 | 99 | SMPD2 |
20 | 6 | 133961374 | 134468561 | 1 | 1 | 6.6e-08 | 3.6e-09 | 8.5e-07 | 30 | TCF21 |
21 | 6 | 148844451 | 150429697 | 1 | 1 | 3.0e-11 | 6.6e-12 | 1.0e+00 | 100 | TAB2 |
22 | 7 | 6502367 | 7988091 | 1 | 1 | 1.7e-08 | 1.3e-06 | 6.2e-01 | 99 | C1GALT1 |
23 | 8 | 8092025 | 10985432 | 8 | 1 | 1.6e-11 | 7.0e-12 | 6.9e-03 | 84 | ERI1 |
24 | 8 | 11103895 | 12966739 | 5 | 1 | 2.8e-08 | 6.0e-08 | 4.1e-03 | 72 | FAM66A |
25 | 8 | 130517157 | 131045893 | 1 | 1 | 6.7e-11 | 3.7e-09 | 5.6e-01 | 99 | GSDMC |
26 | 9 | 126927285 | 128824378 | 5 | 1 | 1.9e-08 | 2.0e-08 | 1.0e+00 | 100 | RABEPK |
27 | 9 | 135629944 | 137034272 | 2 | 2 | 1.1e-10 | 5.9e-14 | 9.3e-04 | 81 | ABO CACFD1 |
28 | 10 | 11477584 | 13569805 | 4 | 2 | 2.4e-14 | 1.2e-17 | 4.0e-02 | 94 | CDC123 SEC61A2 |
29 | 10 | 29603847 | 31102564 | 1 | 1 | 3.7e-13 | 1.7e-15 | 3.0e-04 | 79 | KIAA1462 |
30 | 11 | 65594820 | 67856510 | 3 | 2 | 4.6e-17 | 6.5e-16 | 1.0e+00 | 100 | CCDC87 RAD9A |
31 | 11 | 72325482 | 73717074 | 1 | 1 | 8.9e-08 | 1.1e-06 | 1.0e-01 | 89 | RP11-800A3.7 |
32 | 12 | 49780778 | 51189619 | 1 | 1 | 9.7e-09 | 4.2e-08 | 6.1e-01 | 99 | SMARCD1 |
33 | 12 | 101713020 | 103148974 | 2 | 1 | 1.6e-08 | 9.9e-12 | 1.0e-04 | 68 | C12orf48 |
34 | 13 | 49905672 | 51390447 | 2 | 1 | 9.8e-10 | 2.8e-10 | 1.0e+00 | 100 | DLEU2 |
35 | 15 | 70697945 | 72771648 | 1 | 1 | 1.3e-16 | 1.2e-14 | 8.8e-01 | 100 | THSD4 |
36 | 15 | 83167559 | 84434423 | 1 | 1 | 5.6e-08 | 9.8e-08 | 3.3e-03 | 70 | BTBD1 |
37 | 16 | 13697975 | 14759768 | 1 | 1 | 1.4e-14 | 2.2e-14 | 1.0e+00 | 100 | RP11-65J21.3 |
38 | 16 | 74578110 | 76197034 | 3 | 1 | 8.4e-08 | 1.6e-08 | 1.0e+00 | 100 | TMEM170A |
39 | 16 | 89431290 | 89953773 | 1 | 1 | 2.5e-07 | 3.7e-08 | 1.3e-05 | 38 | DPEP1 |
40 | 17 | 27876561 | 29313078 | 1 | 1 | 3.0e-07 | 2.8e-06 | 3.0e-01 | 95 | BLMH |
41 | 17 | 36211659 | 37597185 | 2 | 1 | 5.3e-08 | 6.1e-08 | 1.0e+00 | 100 | PCGF2 |
42 | 17 | 42774693 | 45796313 | 19 | 1 | 7.7e-15 | 2.0e-13 | 2.3e-01 | 97 | MAPT |
43 | 17 | 45921906 | 47318157 | 1 | 1 | 3.2e-08 | 4.2e-06 | 2.4e-01 | 93 | HOXB2 |
44 | 17 | 61106371 | 62694738 | 5 | 1 | 1.2e-10 | 6.4e-10 | 6.0e-01 | 99 | CD79B |
45 | 17 | 63601146 | 65498820 | 1 | 1 | 3.0e-07 | 5.2e-07 | 7.3e-02 | 87 | PRKCA |
46 | 17 | 79237900 | 80685655 | 6 | 1 | 1.0e-11 | 7.9e-11 | 1.0e+00 | 100 | ASPSCR1 |
47 | 19 | 4153400 | 4687075 | 1 | 1 | 2.1e-07 | 2.5e-07 | 1.0e+00 | 100 | CHAF1A |
48 | 19 | 48464978 | 49872085 | 1 | 1 | 8.9e-08 | 2.1e-07 | 9.8e-02 | 90 | NTN5 |
49 | 20 | 32254831 | 34980465 | 21 | 6 | 1.7e-17 | 2.0e-19 | NaN | NaN | CEP250 GDF5 MAP1LC3A UQCC1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Uterus | 6 | 1.06 | 2.9 |
GTEx | Ovary | 11 | 1.21 | 2.8 |
GTEx | Brain Hypothalamus | 5 | 0.85 | 2.7 |
GTEx | Small Intestine Terminal Ileum | 5 | 1.08 | 2.7 |
GTEx | Vagina | 6 | 0.94 | 2.7 |
GTEx | Artery Coronary | 12 | 1.01 | 2.6 |
GTEx | Brain Frontal Cortex BA9 | 6 | 0.65 | 2.6 |
GTEx | Breast Mammary Tissue (Male) | 11 | 0.92 | 2.6 |
GTEx | Cells EBV-transformed lymphocytes | 10 | 0.70 | 2.6 |
GTEx | Colon Sigmoid | 8 | 0.55 | 2.6 |
GTEx | Esophagus Gastroesophageal Junction | 11 | 0.76 | 2.6 |
GTEx | Heart Atrial Appendage | 13 | 0.82 | 2.6 |
GTEx | Heart Left Ventricle | 10 | 0.65 | 2.6 |
GTEx | Testis | 23 | 0.73 | 2.6 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 7 | 1.38 | 2.6 |
GTEx | Adipose Visceral Omentum | 12 | 0.59 | 2.5 |
GTEx | Brain Cortex | 8 | 0.77 | 2.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 8 | 0.92 | 2.5 |
GTEx | Breast Mammary Tissue | 14 | 0.71 | 2.5 |
GTEx | Esophagus Mucosa | 20 | 0.60 | 2.5 |
GTEx | Lung | 16 | 0.56 | 2.5 |
GTEx | Muscle Skeletal | 17 | 0.59 | 2.5 |
GTEx | Pancreas | 13 | 0.80 | 2.5 |
GTEx | Skin Not Sun Exposed Suprapubic | 16 | 0.65 | 2.5 |
GTEx | Skin Sun Exposed Lower leg | 25 | 0.69 | 2.5 |
GTEx | Spleen | 9 | 0.64 | 2.5 |
GTEx | Stomach | 11 | 0.76 | 2.5 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 14 | 1.06 | 2.5 |
GTEx | Adrenal Gland | 8 | 0.55 | 2.4 |
GTEx | Artery Aorta | 16 | 0.54 | 2.4 |
GTEx | Artery Tibial | 20 | 0.53 | 2.4 |
GTEx | Brain Caudate basal ganglia | 6 | 0.65 | 2.4 |
GTEx | Brain Cerebellar Hemisphere | 11 | 0.74 | 2.4 |
GTEx | Brain Cerebellum | 13 | 0.66 | 2.4 |
GTEx | Brain Hippocampus | 4 | 0.76 | 2.4 |
GTEx | Breast Mammary Tissue (Female) | 12 | 0.73 | 2.4 |
GTEx | Colon Transverse | 14 | 0.68 | 2.4 |
GTEx | Esophagus Muscularis | 19 | 0.59 | 2.4 |
GTEx | Liver | 3 | 0.42 | 2.4 |
GTEx | Nerve Tibial | 18 | 0.42 | 2.4 |
GTEx | Prostate | 7 | 0.84 | 2.4 |
GTEx | Thyroid | 22 | 0.55 | 2.4 |
GTEx | Whole Blood | 10 | 0.50 | 2.4 |
The Cancer Genome Atlas | Esophageal Carcinoma | 6 | 0.88 | 2.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 5 | 0.72 | 2.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 9 | 0.84 | 2.4 |
GTEx | Adipose Subcutaneous | 17 | 0.49 | 2.3 |
GTEx | Brain Putamen basal ganglia | 5 | 0.80 | 2.3 |
GTEx | Cells Transformed fibroblasts | 19 | 0.45 | 2.3 |
GTEx | Pituitary | 7 | 0.63 | 2.3 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 7 | 0.64 | 2.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 14 | 0.51 | 2.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.37 | 2.3 |
METSIM | Adipose | 13 | 0.28 | 2.2 |
NTR | Blood | 9 | 0.37 | 2.2 |
ROSMAP | Brain Pre-frontal Cortex | 15 | 0.34 | 2.2 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 9 | 0.54 | 2.2 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 9 | 0.44 | 2.2 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 4 | 0.39 | 2.2 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 8 | 0.39 | 2.2 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 12 | 0.41 | 2.2 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 13 | 0.52 | 2.2 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 10 | 0.63 | 2.2 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 9 | 0.54 | 2.2 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 9 | 0.53 | 2.2 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 6 | 0.47 | 2.2 |
The Cancer Genome Atlas | Thyroid Carcinoma | 18 | 0.35 | 2.2 |
YFS | Blood | 12 | 0.26 | 2.1 |
CommonMind | Brain Pre-frontal Cortex | 16 | 0.30 | 2.1 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 18 | 0.41 | 2.1 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 16 | 0.39 | 2.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 18 | 0.42 | 2.1 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 6 | 0.54 | 2.1 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 22 | 0.48 | 2.1 |