Best TWAS P=5.01e-12 · Best GWAS P=1.11e-07 conditioned to 0.645
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | GLS | 0.13 | 0.08 | lasso | 4 | 0.07 | 1.5e-04 | -4.7 | -5.4 | 8.4e-08 | 0.31 | 0.17 | 0.71 | TRUE |
2 | GTEx | Artery Coronary | MFSD6 | 0.23 | 0.07 | lasso | 7 | 0.05 | 6.3e-03 | -5.2 | -5.2 | 2.2e-07 | 0.94 | 0.04 | 0.72 | FALSE |
3 | GTEx | Artery Tibial | AC005540.3 | 0.10 | 0.09 | lasso | 4 | 0.08 | 7.4e-07 | -4.6 | 5.3 | 1.5e-07 | -0.25 | 0.24 | 0.71 | FALSE |
4 | GTEx | Brain Cerebellar Hemisphere | MFSD6 | 0.14 | 0.20 | lasso | 4 | 0.13 | 2.8e-04 | -5.3 | -5.2 | 2.5e-07 | 0.97 | 0.02 | 0.93 | FALSE |
5 | GTEx | Brain Cerebellum | RP11-455J20.3 | 0.49 | 0.17 | enet | 33 | 0.29 | 3.3e-09 | 3.8 | -5.3 | 1.4e-07 | 0.02 | 0.08 | 0.60 | FALSE |
6 | GTEx | Brain Hypothalamus | MSTN | 0.24 | -0.01 | enet | 18 | 0.09 | 4.8e-03 | -2.7 | -6.9 | 5.0e-12 | 0.47 | 0.04 | 0.59 | TRUE |
7 | GTEx | Small Intestine Terminal Ileum | HIBCH | 0.20 | 0.07 | enet | 25 | 0.07 | 1.1e-02 | -3.2 | 5.3 | 1.0e-07 | -0.54 | 0.18 | 0.38 | FALSE |
8 | GTEx | Thyroid | AC005540.3 | 0.09 | 0.07 | enet | 5 | 0.04 | 2.5e-04 | -4.6 | 5.1 | 3.1e-07 | -0.21 | 0.20 | 0.72 | FALSE |
9 | YFS | Blood | GLS | 0.08 | 0.08 | lasso | 8 | 0.08 | 4.7e-26 | -4.6 | -5.2 | 2.4e-07 | 0.22 | 0.22 | 0.77 | FALSE |
10 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GLS | 0.02 | 0.01 | enet | 6 | 0.02 | 9.6e-05 | 4.4 | -5.1 | 2.7e-07 | 0.24 | 0.03 | 0.84 | FALSE |
11 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | TMEM194B | 0.06 | 0.06 | lasso | 6 | 0.06 | 2.4e-07 | -5.2 | -5.2 | 2.5e-07 | 0.52 | 0.01 | 0.99 | FALSE |
12 | The Cancer Genome Atlas | Lung Adenocarcinoma | TMEM194B | 0.03 | 0.04 | lasso | 2 | 0.04 | 4.5e-05 | -5.2 | -5.2 | 2.0e-07 | 0.97 | 0.01 | 0.96 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | MFSD6 | 0.06 | 0.05 | enet | 6 | 0.06 | 3.9e-06 | -4.6 | -5.1 | 2.8e-07 | 0.91 | 0.01 | 0.98 | FALSE |