Best TWAS P=5.38e-08 · Best GWAS P=1.38e-07 conditioned to 0.268
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TCP11 | 0.03 | 0.02 | blup | 49 | 0.02 | 1.7e-03 | 4.7 | 5.2 | 2.5e-07 | 0.93 | 0.01 | 0.96 | FALSE |
| 2 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TCP11 | 0.05 | 0.04 | blup | 49 | 0.06 | 1.3e-07 | 4.8 | 5.3 | 1.2e-07 | 0.88 | 0.02 | 0.97 | FALSE |
| 3 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TCP11 | 0.03 | 0.03 | blup | 49 | 0.03 | 3.5e-04 | 4.8 | 5.3 | 1.3e-07 | 0.84 | 0.02 | 0.93 | FALSE |
| 4 | The Cancer Genome Atlas | Thyroid Carcinoma | TCP11 | 0.03 | 0.02 | blup | 49 | 0.02 | 1.6e-03 | 4.7 | 5.4 | 5.4e-08 | 0.87 | 0.02 | 0.72 | TRUE |