Best TWAS P=2.45e-10 · Best GWAS P=4.72e-10 conditioned to 0.000902
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DNAH11 | 0.21 | 0.16 | enet | 37 | 0.14 | 2.8e-16 | 5.1 | -5.7 | 1.3e-08 | 0.56 | 0.42 | 0.58 | FALSE |
2 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | DNAH11 | 0.10 | 0.03 | blup | 329 | 0.02 | 7.1e-03 | 4.8 | -5.3 | 1.4e-07 | 0.52 | 0.15 | 0.66 | FALSE |
3 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DNAH11 | 0.02 | 0.03 | lasso | 2 | 0.02 | 1.4e-05 | 5.2 | -5.4 | 5.6e-08 | 0.53 | 0.37 | 0.55 | FALSE |
4 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | DNAH11 | 0.28 | 0.23 | enet | 7 | 0.20 | 3.1e-10 | 5.0 | -5.2 | 2.3e-07 | 0.51 | 0.42 | 0.58 | FALSE |
5 | The Cancer Genome Atlas | Glioblastoma Multiforme | DNAH11 | 0.29 | 0.19 | lasso | 2 | 0.18 | 3.1e-06 | 5.2 | -5.2 | 1.9e-07 | 0.50 | 0.32 | 0.61 | FALSE |
6 | The Cancer Genome Atlas | Lung Adenocarcinoma | DNAH11 | 0.17 | 0.16 | lasso | 7 | 0.15 | 1.9e-17 | 5.1 | -5.1 | 2.9e-07 | 0.53 | 0.39 | 0.61 | FALSE |
7 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DNAH11 | 0.17 | 0.14 | lasso | 4 | 0.13 | 1.2e-14 | 5.0 | -5.3 | 1.2e-07 | 0.53 | 0.42 | 0.58 | FALSE |
8 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DNAH11 | 0.06 | 0.02 | blup | 331 | 0.03 | 6.4e-04 | -4.5 | -6.3 | 2.4e-10 | 0.54 | 0.05 | 0.80 | TRUE |
9 | The Cancer Genome Atlas | Thyroid Carcinoma | DNAH11 | 0.21 | 0.06 | lasso | 6 | 0.12 | 2.8e-11 | -5.8 | -5.2 | 1.8e-07 | 0.59 | 0.05 | 0.95 | FALSE |