1887 significantly associated models · 344 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 40799427 | 42542658 | 2 | 1 | 1.2e-12 | 3.0e-11 | 3.8e-05 | 62 | FOXO6 |
2 | 1 | 43042125 | 45157738 | 14 | 10 | 3.0e-15 | 2.9e-20 | NaN | NaN | ARTN CCDC24 HYI ST3GAL3 |
3 | 1 | 45423943 | 46809419 | 1 | 1 | 2.8e-07 | 3.9e-06 | 2.6e-01 | 94 | RP11-767N6.2 |
4 | 1 | 71163715 | 73435171 | 1 | 1 | 1.7e-23 | 2.1e-16 | 3.2e-01 | 98 | NEGR1 |
5 | 1 | 73798439 | 75701824 | 5 | 2 | 2.1e-11 | 5.0e-10 | 3.4e-04 | 67 | FPGT TNNI3K |
6 | 1 | 92924057 | 94534354 | 5 | 1 | 1.7e-17 | 5.7e-18 | 1.0e+00 | 100 | TMED5 |
7 | 1 | 109316076 | 110742615 | 4 | 1 | 1.2e-09 | 5.5e-09 | 1.5e-08 | 6 | SYPL2 |
8 | 1 | 150282784 | 151701345 | 1 | 1 | 5.7e-08 | 8.9e-05 | 2.0e-03 | 38 | PRUNE |
9 | 1 | 173437024 | 175663031 | 1 | 1 | 2.0e-07 | 2.1e-07 | 2.7e-01 | 96 | RABGAP1L |
10 | 1 | 183961643 | 185416670 | 1 | 1 | 1.2e-07 | 1.1e-07 | 1.0e+00 | 100 | EDEM3 |
11 | 1 | 201616627 | 202161644 | 1 | 1 | 1.2e-07 | 3.8e-07 | 8.8e-02 | 89 | LMOD1 |
12 | 1 | 203692179 | 205241659 | 2 | 1 | 3.9e-09 | 1.6e-13 | 8.7e-06 | 64 | MDM4 |
13 | 1 | 234832199 | 236307360 | 2 | 1 | 8.6e-09 | 4.6e-09 | 1.0e+00 | 100 | TBCE |
14 | 1 | 242590540 | 244359621 | 3 | 1 | 3.2e-12 | 3.2e-12 | 1.0e+00 | 100 | RP11-261C10.5 |
15 | 2 | 43899918 | 45698128 | 2 | 1 | 1.4e-09 | 1.5e-08 | 4.9e-03 | 75 | CAMKMT |
16 | 2 | 48072855 | 49519654 | 1 | 1 | 2.0e-07 | 8.2e-08 | 4.7e-03 | 72 | STON1 |
17 | 2 | 72787254 | 74187703 | 1 | 1 | 2.7e-07 | 2.9e-07 | 1.3e-05 | 28 | FBXO41 |
18 | 2 | 99468341 | 101731705 | 3 | 3 | 2.0e-16 | 1.1e-20 | 6.7e-02 | 96 | AFF3 LONRF2 |
19 | 2 | 106725928 | 108199394 | 1 | 1 | 1.7e-07 | 3.4e-07 | 1.0e+00 | 100 | ST6GAL2 |
20 | 2 | 159066022 | 159785940 | 1 | 1 | 1.2e-07 | 2.0e-09 | 3.1e-06 | 40 | PKP4 |
21 | 2 | 160879651 | 162798581 | 3 | 2 | 2.9e-17 | 1.9e-16 | 1.0e+00 | 100 | RBMS1 TANK |
22 | 2 | 233047291 | 234434621 | 2 | 1 | 5.6e-08 | 5.1e-07 | 1.5e-01 | 92 | C2orf82 |
23 | 3 | 47204518 | 51077419 | 49 | 8 | 3.0e-40 | 4.6e-34 | NaN | NaN | GPX1 MAP4 MST1R NAT6 RBM6 RNF123 TRAIP |
24 | 3 | 70757099 | 71880670 | 1 | 1 | 7.1e-09 | 4.5e-15 | 3.7e-08 | 51 | FOXP1 |
25 | 3 | 84767271 | 86367480 | 1 | 2 | 1.6e-15 | 3.7e-17 | 1.5e-03 | 86 | CADM2 |
26 | 3 | 107181540 | 108633112 | 1 | 1 | 5.3e-09 | 1.0e-08 | 2.5e-02 | 85 | IFT57 |
27 | 4 | 1947324 | 3943984 | 10 | 1 | 7.2e-15 | 1.0e-13 | 2.9e-01 | 98 | GRK4 |
28 | 4 | 17104059 | 18507692 | 1 | 1 | 2.6e-07 | 1.1e-07 | 1.5e-02 | 79 | DCAF16 |
29 | 4 | 105598022 | 107092169 | 1 | 1 | 2.4e-13 | 1.6e-15 | 3.6e-06 | 66 | PPA2 |
30 | 4 | 151637154 | 153373680 | 2 | 1 | 2.2e-09 | 2.8e-11 | 2.5e-06 | 50 | FAM160A1 |
31 | 5 | 59028853 | 61156570 | 8 | 3 | 6.8e-19 | 5.5e-19 | 4.4e-03 | 90 | ELOVL7 GNL3LP1 PART1 |
32 | 5 | 87006055 | 88677293 | 3 | 2 | 2.3e-10 | 7.6e-16 | 1.9e-04 | 79 | CTC-498M16.2 LINC00461 |
33 | 5 | 92051598 | 93618113 | 1 | 1 | 8.4e-08 | 3.3e-08 | 1.6e-06 | 25 | NR2F1-AS1 |
34 | 5 | 108341478 | 109898183 | 1 | 1 | 8.0e-09 | 3.0e-08 | 1.6e-01 | 94 | MAN2A1 |
35 | 5 | 111615346 | 113051271 | 1 | 1 | 2.6e-08 | 2.8e-07 | 1.6e-01 | 93 | DCP2 |
36 | 6 | 25266147 | 26682323 | 1 | 1 | 1.2e-07 | 1.3e-17 | 6.6e-14 | 23 | TRIM38 |
37 | 6 | 87358929 | 88997402 | 3 | 1 | 2.7e-10 | 1.5e-08 | 1.1e-01 | 92 | SLC35A1 |
38 | 6 | 108183628 | 109704062 | 1 | 1 | 6.4e-10 | 1.3e-08 | 2.6e-01 | 96 | FOXO3 |
39 | 7 | 1580921 | 2977732 | 1 | 1 | 2.3e-07 | 2.0e-12 | 3.3e-08 | 38 | FTSJ2 |
40 | 7 | 20885792 | 22639717 | 1 | 1 | 2.4e-10 | 4.7e-10 | 9.0e-04 | 72 | DNAH11 |
41 | 7 | 23913624 | 25432157 | 1 | 1 | 7.0e-08 | 2.5e-08 | 8.0e-02 | 90 | MPP6 |
42 | 7 | 70354372 | 72313144 | 2 | 2 | 1.5e-10 | 1.9e-10 | 4.7e-02 | 90 | CALN1 WBSCR17 |
43 | 7 | 75059331 | 75842792 | 2 | 1 | 2.7e-07 | 2.3e-07 | 1.0e+00 | 100 | TRIM73 |
44 | 7 | 99260092 | 100696616 | 2 | 1 | 9.4e-10 | 4.3e-06 | 7.4e-01 | 100 | STAG3L5P-PVRIG2P-PILRB |
45 | 8 | 29996824 | 31433801 | 1 | 1 | 1.9e-08 | 1.8e-09 | 2.2e-02 | 86 | TEX15 |
46 | 8 | 65740418 | 67170378 | 2 | 1 | 1.2e-07 | 1.3e-08 | 3.3e-02 | 86 | CTD-3025N20.2 |
47 | 8 | 86841229 | 88271452 | 2 | 1 | 9.9e-11 | 4.0e-07 | 1.1e-04 | 42 | CPNE3 |
48 | 8 | 118563271 | 119371015 | 1 | 1 | 1.8e-07 | 4.6e-09 | 5.7e-07 | 27 | EXT1 |
49 | 8 | 140969818 | 142706843 | 2 | 2 | 4.0e-10 | 2.6e-12 | 1.4e-10 | 16 | EIF2C2 PTK2 |
50 | 8 | 142839492 | 144515639 | 5 | 1 | 1.8e-11 | 8.9e-09 | 3.1e-02 | 86 | THEM6 |
51 | 8 | 144975935 | 146293414 | 4 | 1 | 8.7e-09 | 7.4e-08 | 8.8e-01 | 100 | CYHR1 |
52 | 9 | 111532820 | 112121763 | 1 | 1 | 2.0e-07 | 1.1e-07 | 1.0e+00 | 100 | C9orf5 |
53 | 9 | 134778255 | 136238509 | 1 | 1 | 6.6e-10 | 4.0e-08 | 5.3e-07 | 16 | DDX31 |
54 | 10 | 10349662 | 12076043 | 1 | 1 | 7.1e-11 | 1.3e-11 | 2.5e-04 | 71 | CELF2 |
55 | 10 | 64195778 | 65911294 | 4 | 1 | 7.1e-11 | 3.4e-08 | 8.1e-04 | 63 | JMJD1C-AS1 |
56 | 10 | 68946505 | 70532990 | 2 | 1 | 8.9e-10 | 2.2e-09 | 8.2e-03 | 80 | HERC4 |
57 | 10 | 102853189 | 104956035 | 4 | 2 | 4.1e-13 | 4.5e-13 | 2.5e-01 | 98 | ACTR1A NPM3 |
58 | 10 | 111062431 | 112588355 | 1 | 1 | 1.8e-07 | 1.4e-07 | 1.0e+00 | 100 | ADD3 |
59 | 10 | 125739009 | 127174440 | 1 | 1 | 3.3e-09 | 7.7e-08 | 6.3e-01 | 99 | METTL10 |
60 | 10 | 133048749 | 134482926 | 2 | 2 | 2.1e-09 | 3.0e-13 | 1.7e-01 | 96 | BNIP3 PPP2R2D |
61 | 11 | 62126494 | 62688269 | 2 | 1 | 6.4e-08 | 3.2e-07 | 2.2e-04 | 48 | C11orf83 |
62 | 11 | 63389016 | 64780509 | 1 | 1 | 3.1e-07 | 8.5e-06 | 1.7e-01 | 90 | PRDX5 |
63 | 11 | 65353906 | 67192555 | 10 | 2 | 5.0e-12 | 5.5e-12 | 6.6e-02 | 93 | B3GNT1 SNX32 |
64 | 11 | 87146898 | 88606591 | 1 | 1 | 5.9e-08 | 3.6e-07 | 5.5e-02 | 86 | RAB38 |
65 | 11 | 89354278 | 90716657 | 1 | 1 | 5.2e-08 | 2.4e-08 | 4.6e-02 | 87 | RP11-121L10.3 |
66 | 11 | 94805896 | 96276010 | 4 | 1 | 1.5e-14 | 3.3e-12 | 3.3e-01 | 98 | CEP57 |
67 | 11 | 101404645 | 102797829 | 1 | 1 | 1.7e-07 | 1.7e-07 | 1.0e+00 | 100 | RP11-864G5.3 |
68 | 11 | 122897730 | 124309814 | 1 | 1 | 1.0e-09 | 6.1e-07 | 1.1e-03 | 57 | ZNF202 |
69 | 12 | 55677395 | 57125879 | 5 | 1 | 1.8e-11 | 3.3e-11 | 1.0e+00 | 100 | RPS26 |
70 | 12 | 120636549 | 121146219 | 1 | 1 | 2.6e-07 | 8.4e-06 | 9.3e-01 | 100 | GATC |
71 | 12 | 122258047 | 124715313 | 13 | 1 | 1.1e-11 | 7.4e-12 | 3.4e-02 | 90 | MPHOSPH9 |
72 | 13 | 31078511 | 32595740 | 1 | 1 | 8.6e-10 | 9.3e-09 | 1.9e-02 | 83 | B3GALTL |
73 | 13 | 98109395 | 99925872 | 3 | 1 | 5.4e-10 | 8.0e-08 | 8.0e-01 | 100 | STK24 |
74 | 13 | 100487469 | 101940873 | 1 | 1 | 1.9e-07 | 1.0e-08 | 3.5e-04 | 61 | GGACT |
75 | 14 | 22670975 | 24125886 | 3 | 1 | 6.1e-08 | 5.3e-08 | 1.0e+00 | 100 | RP11-298I3.1 |
76 | 14 | 26213713 | 27761335 | 1 | 1 | 1.7e-08 | 5.6e-14 | 2.6e-07 | 53 | NOVA1 |
77 | 14 | 69027866 | 70518587 | 2 | 1 | 2.2e-10 | 3.5e-09 | 1.7e-02 | 84 | GALNT16 |
78 | 14 | 71712035 | 73729498 | 1 | 1 | 5.5e-08 | 7.7e-09 | 5.3e-05 | 51 | RGS6 |
79 | 14 | 103325757 | 104892153 | 7 | 1 | 2.0e-11 | 2.3e-11 | 4.5e-02 | 91 | TRMT61A |
80 | 15 | 46780520 | 48764942 | 1 | 1 | 1.9e-07 | 3.2e-12 | 2.4e-08 | 36 | SEMA6D |
81 | 15 | 81734963 | 82581264 | 1 | 1 | 1.4e-07 | 5.9e-06 | 1.1e-01 | 88 | EFTUD1 |
82 | 16 | 86671 | 1962132 | 9 | 2 | 1.7e-09 | 1.3e-09 | 1.5e-04 | 61 | CACNA1H WDR24 |
83 | 16 | 11326785 | 12915579 | 2 | 2 | 2.0e-08 | 1.1e-07 | 1.7e-01 | 93 | RP11-166B2.1 SNX29 |
84 | 16 | 14323446 | 15921958 | 2 | 1 | 6.7e-08 | 2.9e-06 | 5.7e-01 | 98 | RP11-1186N24.5 |
85 | 16 | 27412414 | 30703155 | 24 | 2 | 3.4e-14 | 8.6e-13 | 1.8e-01 | 96 | EIF3CL INO80E |
86 | 16 | 52772129 | 54235440 | 2 | 1 | 9.3e-11 | 3.0e-11 | 7.5e-02 | 93 | RBL2 |
87 | 16 | 71070698 | 72657531 | 3 | 1 | 1.6e-09 | 2.6e-07 | 8.5e-01 | 100 | IST1 |
88 | 17 | 17747289 | 18923818 | 1 | 1 | 3.4e-10 | 1.7e-06 | 2.7e-01 | 95 | CCDC144B |
89 | 17 | 29028281 | 30556282 | 1 | 1 | 2.2e-07 | 7.3e-07 | 1.5e-01 | 91 | RAB11FIP4 |
90 | 17 | 37125922 | 38512197 | 1 | 1 | 8.8e-08 | 1.7e-05 | 1.3e-01 | 88 | TCAP |
91 | 17 | 42774693 | 45796313 | 20 | 1 | 2.4e-13 | 2.8e-11 | 9.4e-01 | 100 | DND1 |
92 | 18 | 20393480 | 21863589 | 2 | 1 | 5.3e-09 | 1.2e-08 | 1.0e+00 | 100 | C18orf8 |
93 | 18 | 34614002 | 35378540 | 1 | 1 | 2.8e-11 | 6.0e-25 | 1.8e-15 | 40 | CELF4 |
94 | 19 | 1473344 | 2923263 | 1 | 1 | 9.5e-08 | 6.6e-06 | 5.0e-04 | 40 | DOT1L |
95 | 19 | 17562969 | 19237273 | 6 | 2 | 2.4e-10 | 3.4e-10 | 7.9e-02 | 92 | IL12RB1 JUND |
96 | 19 | 32209988 | 33668090 | 1 | 1 | 1.2e-07 | 8.1e-09 | 2.1e-02 | 84 | DPY19L3 |
97 | 19 | 35448803 | 36956110 | 4 | 1 | 5.0e-08 | 1.4e-07 | 4.3e-01 | 98 | COX6B1 |
98 | 19 | 45064435 | 46506809 | 2 | 1 | 1.7e-14 | 1.5e-14 | 1.0e+00 | 100 | CKM |
99 | 20 | 2390880 | 3850968 | 3 | 1 | 1.1e-09 | 5.5e-08 | 9.1e-01 | 100 | FASTKD5 |
100 | 20 | 32865844 | 34556216 | 3 | 1 | 4.6e-09 | 2.2e-08 | 3.3e-01 | 97 | PROCR |
101 | 20 | 42924921 | 44408428 | 1 | 1 | 3.1e-12 | 3.8e-13 | 1.0e+00 | 100 | STK4 |
102 | 20 | 57934675 | 59346576 | 1 | 1 | 4.1e-08 | 6.7e-09 | 8.7e-08 | 15 | C20orf197 |
103 | 22 | 29485708 | 30932673 | 1 | 1 | 1.3e-07 | 1.4e-07 | 1.0e+00 | 100 | ASCC2 |
104 | 22 | 39192995 | 40571499 | 1 | 1 | 3.0e-07 | 6.1e-09 | 1.5e-03 | 70 | MGAT3 |
105 | 22 | 42210985 | 43615241 | 1 | 1 | 5.6e-08 | 2.2e-05 | 7.2e-06 | -12 | RRP7A |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Putamen basal ganglia | 9 | 1.44 | 3.8 |
GTEx | Brain Frontal Cortex BA9 | 16 | 1.73 | 3.7 |
GTEx | Brain Cerebellar Hemisphere | 22 | 1.48 | 3.6 |
GTEx | Brain Cortex | 22 | 2.13 | 3.6 |
GTEx | Esophagus Gastroesophageal Junction | 26 | 1.80 | 3.6 |
GTEx | Ovary | 19 | 2.09 | 3.6 |
GTEx | Spleen | 21 | 1.49 | 3.6 |
GTEx | Vagina | 13 | 2.05 | 3.6 |
GTEx | Brain Cerebellum | 26 | 1.31 | 3.5 |
GTEx | Brain Nucleus accumbens basal ganglia | 13 | 1.50 | 3.5 |
GTEx | Breast Mammary Tissue | 33 | 1.67 | 3.5 |
GTEx | Cells EBV-transformed lymphocytes | 23 | 1.62 | 3.5 |
GTEx | Colon Sigmoid | 28 | 1.92 | 3.5 |
GTEx | Pancreas | 32 | 1.96 | 3.5 |
GTEx | Prostate | 14 | 1.68 | 3.5 |
GTEx | Small Intestine Terminal Ileum | 10 | 2.17 | 3.5 |
GTEx | Stomach | 26 | 1.79 | 3.5 |
GTEx | Uterus | 11 | 1.94 | 3.5 |
GTEx | Adipose Visceral Omentum | 30 | 1.47 | 3.4 |
GTEx | Brain Caudate basal ganglia | 12 | 1.30 | 3.4 |
GTEx | Brain Hippocampus | 8 | 1.53 | 3.4 |
GTEx | Esophagus Muscularis | 44 | 1.36 | 3.4 |
GTEx | Heart Atrial Appendage | 22 | 1.39 | 3.4 |
GTEx | Skin Not Sun Exposed Suprapubic | 34 | 1.38 | 3.4 |
GTEx | Artery Aorta | 44 | 1.48 | 3.3 |
GTEx | Artery Coronary | 20 | 1.69 | 3.3 |
GTEx | Breast Mammary Tissue (Female) | 25 | 1.52 | 3.3 |
GTEx | Colon Transverse | 32 | 1.55 | 3.3 |
GTEx | Esophagus Mucosa | 43 | 1.30 | 3.3 |
GTEx | Heart Left Ventricle | 23 | 1.50 | 3.3 |
GTEx | Lung | 43 | 1.50 | 3.3 |
GTEx | Muscle Skeletal | 37 | 1.28 | 3.3 |
GTEx | Pituitary | 12 | 1.08 | 3.3 |
GTEx | Skin Sun Exposed Lower leg | 44 | 1.21 | 3.3 |
GTEx | Testis | 40 | 1.27 | 3.3 |
ROSMAP | Brain Pre-frontal Cortex | 54 | 1.23 | 3.3 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 15 | 1.37 | 3.3 |
GTEx | Adipose Subcutaneous | 41 | 1.17 | 3.2 |
GTEx | Artery Tibial | 51 | 1.36 | 3.2 |
GTEx | Brain Hypothalamus | 10 | 1.69 | 3.2 |
GTEx | Breast Mammary Tissue (Male) | 12 | 1.01 | 3.2 |
GTEx | Cells Transformed fibroblasts | 55 | 1.31 | 3.2 |
GTEx | Liver | 10 | 1.39 | 3.2 |
GTEx | Nerve Tibial | 53 | 1.23 | 3.2 |
GTEx | Thyroid | 52 | 1.30 | 3.2 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 17 | 1.66 | 3.2 |
GTEx | Adrenal Gland | 13 | 0.89 | 3.1 |
GTEx | Whole Blood | 22 | 1.10 | 3.1 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 17 | 1.07 | 3.1 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 21 | 1.26 | 3.1 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 12 | 1.12 | 3.1 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 16 | 0.95 | 3.1 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 11 | 0.86 | 3.1 |
NTR | Blood | 16 | 0.67 | 3.0 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 18 | 1.09 | 3.0 |
The Cancer Genome Atlas | Esophageal Carcinoma | 10 | 1.46 | 3.0 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 27 | 0.99 | 3.0 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 20 | 0.98 | 3.0 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 41 | 0.95 | 3.0 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 11 | 0.99 | 3.0 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 29 | 1.16 | 3.0 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 10 | 1.45 | 3.0 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 5 | 0.93 | 3.0 |
The Cancer Genome Atlas | Thyroid Carcinoma | 46 | 0.89 | 3.0 |
METSIM | Adipose | 41 | 0.89 | 2.9 |
CommonMind | Brain Pre-frontal Cortex | 48 | 0.89 | 2.9 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 21 | 1.02 | 2.9 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 33 | 0.81 | 2.9 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 30 | 1.02 | 2.9 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 12 | 0.90 | 2.9 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 42 | 0.91 | 2.9 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 6 | 1.18 | 2.9 |
YFS | Blood | 31 | 0.67 | 2.8 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 31 | 0.70 | 2.8 |