TWAS
hub
About
Usage
Models
Genes
Traits
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Traits
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Myopia
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chr9:138,850,610-139,328,551
Best TWAS P=5.53e-08 · Best GWAS P=7.24e-08 conditioned to 1
138.9M
139M
139.1M
139.2M
139.3M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
QSOX2
0.10
0.11
lasso
2
0.10
1.6e-06
-5.4
5.4
5.5e-08
-1.00
0.00
1.00
TRUE
2
The Cancer Genome Atlas
Lung Adenocarcinoma
QSOX2
0.05
0.05
enet
4
0.05
2.7e-06
-5.4
5.4
8.4e-08
-0.94
0.00
1.00
FALSE
3
The Cancer Genome Atlas
Prostate Adenocarcinoma
QSOX2
0.08
0.07
lasso
4
0.08
1.2e-08
-5.4
5.3
1.1e-07
-0.92
0.00
1.00
FALSE
4
The Cancer Genome Atlas
Thyroid Carcinoma
QSOX2
0.06
0.01
blup
32
0.05
1.6e-05
3.1
5.1
2.8e-07
-0.62
0.01
0.79
FALSE