Best TWAS P=3.51e-16 · Best GWAS P=9.31e-14 conditioned to 1.05e-11
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adrenal Gland | ERAP1 | 0.38 | 0.14 | lasso | 7 | 0.22 | 1.4e-08 | -6.1 | -6.1 | 8.8e-10 | -0.02 | 0.96 | 0.01 | FALSE |
2 | GTEx | Brain Frontal Cortex BA9 | ERAP1 | 0.26 | 0.16 | lasso | 6 | 0.20 | 5.1e-06 | -5.7 | -5.7 | 1.3e-08 | 0.00 | 0.50 | 0.03 | FALSE |
3 | GTEx | Breast Mammary Tissue (Female) | ERAP1 | 0.18 | 0.05 | lasso | 5 | 0.05 | 1.5e-02 | -5.7 | -5.7 | 1.2e-08 | -0.01 | 0.15 | 0.05 | FALSE |
4 | GTEx | Cells EBV-transformed lymphocytes | ERAP1 | 0.66 | 0.35 | lasso | 14 | 0.53 | 3.5e-20 | -5.6 | -5.8 | 6.4e-09 | -0.02 | 1.00 | 0.00 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | ERAP1 | 0.48 | 0.37 | enet | 37 | 0.47 | 3.3e-39 | -5.7 | -5.8 | 8.8e-09 | -0.01 | 1.00 | 0.00 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | CTD-2260A17.1 | 0.35 | 0.27 | lasso | 7 | 0.37 | 6.8e-29 | -5.7 | -5.6 | 2.2e-08 | -0.03 | 1.00 | 0.00 | FALSE |
7 | GTEx | Colon Sigmoid | ERAP1 | 0.31 | 0.25 | lasso | 11 | 0.26 | 9.6e-10 | -5.7 | -5.7 | 1.4e-08 | -0.01 | 0.99 | 0.00 | FALSE |
8 | GTEx | Colon Transverse | ERAP1 | 0.44 | 0.28 | lasso | 11 | 0.31 | 2.2e-15 | -5.7 | -6.6 | 4.2e-11 | -0.02 | 0.99 | 0.01 | FALSE |
9 | GTEx | Esophagus Gastroesophageal Junction | ERAP1 | 0.29 | 0.18 | lasso | 8 | 0.13 | 2.6e-05 | -5.7 | -6.8 | 1.1e-11 | -0.01 | 0.57 | 0.03 | FALSE |
10 | GTEx | Esophagus Mucosa | ERAP1 | 0.23 | 0.19 | lasso | 15 | 0.22 | 1.1e-14 | -4.9 | -5.5 | 3.6e-08 | -0.04 | 1.00 | 0.00 | FALSE |
11 | GTEx | Esophagus Muscularis | ERAP1 | 0.19 | 0.06 | enet | 19 | 0.11 | 2.5e-07 | -3.9 | -6.2 | 4.6e-10 | -0.04 | 0.97 | 0.00 | FALSE |
12 | GTEx | Heart Left Ventricle | ERAP1 | 0.20 | 0.10 | enet | 14 | 0.09 | 2.2e-05 | -5.7 | -5.5 | 4.0e-08 | 0.01 | 0.98 | 0.00 | FALSE |
13 | GTEx | Liver | CAST | 0.32 | 0.03 | enet | 23 | 0.12 | 4.4e-04 | -6.1 | -8.2 | 3.5e-16 | -0.08 | 0.18 | 0.05 | TRUE |
14 | GTEx | Liver | ERAP1 | 0.24 | 0.15 | lasso | 3 | 0.12 | 3.4e-04 | -5.7 | -6.0 | 2.3e-09 | 0.01 | 0.45 | 0.03 | FALSE |
15 | GTEx | Liver | CTC-506B8.1 | 0.34 | 0.07 | enet | 22 | 0.05 | 1.9e-02 | -5.0 | -6.0 | 1.8e-09 | 0.01 | 0.16 | 0.05 | FALSE |
16 | GTEx | Lung | ERAP1 | 0.41 | 0.27 | enet | 37 | 0.37 | 3.2e-29 | -5.7 | -5.4 | 6.4e-08 | -0.05 | 1.00 | 0.00 | FALSE |
17 | GTEx | Nerve Tibial | ERAP1 | 0.39 | 0.23 | enet | 32 | 0.26 | 1.1e-18 | -5.5 | -5.3 | 1.2e-07 | 0.00 | 1.00 | 0.00 | FALSE |
18 | GTEx | Pancreas | ERAP1 | 0.38 | 0.36 | lasso | 12 | 0.43 | 1.0e-19 | -4.9 | -5.9 | 4.0e-09 | -0.03 | 1.00 | 0.00 | FALSE |
19 | GTEx | Skin Not Sun Exposed Suprapubic | CAST | 0.17 | -0.01 | lasso | 6 | 0.02 | 2.3e-02 | -2.4 | -5.3 | 9.2e-08 | -0.05 | 0.08 | 0.11 | FALSE |
20 | GTEx | Skin Not Sun Exposed Suprapubic | ERAP1 | 0.30 | 0.23 | lasso | 4 | 0.25 | 5.9e-14 | -5.5 | -5.2 | 2.1e-07 | -0.01 | 1.00 | 0.00 | FALSE |
21 | GTEx | Skin Sun Exposed Lower leg | ERAP1 | 0.26 | 0.23 | lasso | 5 | 0.26 | 3.0e-21 | -5.5 | -5.2 | 1.5e-07 | -0.01 | 1.00 | 0.00 | FALSE |
22 | GTEx | Stomach | ERAP1 | 0.29 | 0.13 | lasso | 10 | 0.18 | 7.5e-09 | -4.9 | -6.0 | 1.8e-09 | -0.04 | 0.99 | 0.00 | FALSE |
23 | GTEx | Thyroid | CTC-506B8.1 | 0.09 | 0.03 | enet | 28 | 0.03 | 3.6e-03 | -2.4 | -5.2 | 1.5e-07 | -0.01 | 0.48 | 0.02 | FALSE |
24 | GTEx | Whole Blood | ERAP1 | 0.24 | 0.18 | lasso | 14 | 0.22 | 4.5e-20 | -4.9 | -5.4 | 7.5e-08 | -0.03 | 1.00 | 0.00 | FALSE |
25 | GTEx | Whole Blood | CTD-2260A17.1 | 0.23 | 0.07 | lasso | 9 | 0.17 | 3.9e-15 | -4.0 | -5.6 | 2.1e-08 | 0.01 | 1.00 | 0.00 | FALSE |
26 | ROSMAP | Brain Pre-frontal Cortex | AC008865.1 | 0.05 | 0.00 | bslmm | 458 | 0.02 | 8.2e-04 | 2.9 | -5.5 | 3.2e-08 | -0.07 | 0.21 | 0.07 | FALSE |
27 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ERAP1 | 0.19 | 0.16 | blup | 130 | 0.23 | 1.0e-19 | -5.5 | -5.8 | 6.1e-09 | -0.04 | 0.01 | 0.99 | FALSE |
28 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ERAP1 | 0.24 | 0.24 | lasso | 10 | 0.29 | 1.8e-59 | -5.7 | -5.7 | 1.3e-08 | -0.02 | 0.01 | 0.99 | FALSE |
29 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | ERAP1 | 0.42 | 0.32 | blup | 131 | 0.43 | 1.0e-22 | -5.5 | -5.5 | 3.8e-08 | -0.01 | 0.01 | 0.99 | FALSE |
30 | The Cancer Genome Atlas | Colon Adenocarcinoma | ERAP1 | 0.32 | 0.29 | blup | 130 | 0.36 | 6.4e-22 | -5.7 | -6.3 | 3.7e-10 | 0.01 | 0.02 | 0.98 | FALSE |
31 | The Cancer Genome Atlas | Esophageal Carcinoma | ERAP1 | 0.24 | 0.09 | blup | 130 | 0.14 | 4.6e-05 | -5.5 | -6.1 | 1.3e-09 | -0.03 | 0.04 | 0.91 | FALSE |
32 | The Cancer Genome Atlas | Glioblastoma Multiforme | CAST | 0.16 | 0.04 | blup | 168 | 0.03 | 4.4e-02 | -2.6 | -5.7 | 1.6e-08 | -0.01 | 0.05 | 0.62 | FALSE |
33 | The Cancer Genome Atlas | Glioblastoma Multiforme | ERAP1 | 0.57 | 0.41 | lasso | 10 | 0.42 | 3.0e-14 | -5.7 | -5.4 | 8.2e-08 | 0.00 | 0.02 | 0.98 | FALSE |
34 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ERAP1 | 0.24 | 0.24 | lasso | 8 | 0.30 | 1.2e-34 | -5.7 | -5.5 | 4.4e-08 | 0.00 | 0.01 | 0.99 | FALSE |
35 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ERAP1 | 0.39 | 0.30 | lasso | 9 | 0.37 | 9.0e-44 | -5.7 | -5.6 | 2.2e-08 | -0.02 | 0.01 | 0.99 | FALSE |
36 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ERAP1 | 0.29 | 0.24 | enet | 17 | 0.29 | 7.7e-17 | -4.9 | -5.4 | 7.5e-08 | -0.02 | 0.17 | 0.83 | FALSE |
37 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | ERAP1 | 0.47 | 0.33 | blup | 130 | 0.36 | 7.0e-18 | -5.7 | -5.8 | 5.3e-09 | 0.00 | 0.02 | 0.98 | FALSE |
38 | The Cancer Genome Atlas | Lung Adenocarcinoma | ERAP1 | 0.30 | 0.36 | lasso | 7 | 0.40 | 4.0e-49 | -5.7 | -5.5 | 3.6e-08 | -0.01 | 0.01 | 0.99 | FALSE |
39 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ERAP1 | 0.19 | 0.20 | blup | 131 | 0.21 | 3.0e-23 | -4.9 | -5.5 | 3.6e-08 | -0.01 | 0.32 | 0.68 | FALSE |
40 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ERAP1 | 0.23 | 0.26 | lasso | 10 | 0.27 | 2.8e-18 | -5.7 | -5.2 | 2.1e-07 | -0.01 | 0.02 | 0.98 | FALSE |
41 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | ERAP1 | 0.40 | 0.25 | lasso | 13 | 0.34 | 5.0e-15 | -5.5 | -5.4 | 6.9e-08 | -0.02 | 0.02 | 0.98 | FALSE |
42 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | ERAP1 | 0.15 | 0.08 | lasso | 13 | 0.10 | 1.2e-04 | -4.9 | -5.2 | 1.8e-07 | -0.03 | 0.06 | 0.89 | FALSE |
43 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ERAP1 | 0.31 | 0.32 | lasso | 9 | 0.38 | 1.2e-41 | -5.7 | -5.4 | 7.7e-08 | -0.01 | 0.01 | 0.99 | FALSE |
44 | The Cancer Genome Atlas | Rectum Adenocarcinoma | ERAP1 | 0.28 | 0.06 | blup | 131 | 0.12 | 8.1e-04 | 2.6 | -5.2 | 1.6e-07 | -0.01 | 0.03 | 0.81 | FALSE |
45 | The Cancer Genome Atlas | Soft Tissue Sarcoma | ERAP1 | 0.20 | 0.12 | enet | 13 | 0.21 | 6.9e-13 | -5.5 | -5.6 | 2.1e-08 | -0.02 | 0.01 | 0.99 | FALSE |
46 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | ERAP1 | 0.20 | 0.00 | blup | 131 | 0.09 | 2.3e-03 | 2.6 | -5.3 | 1.1e-07 | -0.02 | 0.04 | 0.58 | FALSE |
47 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ERAP1 | 0.26 | 0.31 | lasso | 9 | 0.35 | 4.1e-26 | -5.7 | -5.8 | 6.8e-09 | -0.02 | 0.02 | 0.98 | FALSE |
48 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | ERAP1 | 0.40 | 0.17 | enet | 18 | 0.29 | 1.1e-10 | -6.1 | -5.5 | 4.5e-08 | -0.03 | 0.00 | 1.00 | FALSE |
49 | The Cancer Genome Atlas | Thyroid Carcinoma | ERAP1 | 0.39 | 0.35 | enet | 17 | 0.44 | 4.9e-47 | -5.7 | -5.6 | 1.9e-08 | -0.01 | 0.01 | 0.99 | FALSE |