TWAS
hub
About
Usage
Models
Genes
Traits
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Traits
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Cardiovascular Disease
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chr12:121,146,219-122,706,844
Best TWAS P=2.44e-13 · Best GWAS P=1.64e-13 conditioned to 1
121.2M
121.4M
121.6M
121.8M
122M
122.2M
122.4M
122.6M
0
5
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
GTEx
Testis
RNF34
0.18
0.20
lasso
3
0.17
5.2e-08
-7.3
7.3
2.4e-13
-0.97
0.01
0.99
TRUE
2
GTEx
Lung
KDM2B
0.10
0.06
lasso
3
0.05
1.4e-04
-7.2
7.2
4.5e-13
-0.97
0.02
0.98
FALSE
1
GTEx
Breast Mammary Tissue (Female)
KDM2B
0.13
0.00
lasso
3
0.01
1.2e-01
-7.3
7.2
6.9e-13
-0.91
0.03
0.39
FALSE
5
GTEx
Thyroid
KDM2B
0.13
0.05
enet
20
0.05
8.1e-05
-4.1
6.3
2.7e-10
-0.91
0.02
0.98
FALSE
3
GTEx
Nerve Tibial
KDM2B
0.08
0.04
enet
16
0.05
1.6e-04
-7.3
5.2
2.0e-07
-0.81
0.02
0.96
FALSE