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chr12:111,102,574-113,517,494

Best TWAS P=1.5e-26 · Best GWAS P=3.66e-35 conditioned to NaN

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	ALDH2	0.05	0.11	blup	223	0.10	1.8e-12	-6.1	7.1	1.3e-12	0.42	1.00	0.00	FALSE
2	CommonMind	Brain Pre-frontal Cortex	ATXN2	0.02	0.03	enet	8	0.02	4.8e-04	-6.9	9.6	7.7e-22	0.56	0.28	0.62	FALSE
3	CommonMind	Brain Pre-frontal Cortex	NAA25	0.03	0.02	blup	213	0.03	1.1e-04	-5.1	-5.9	4.1e-09	-0.33	0.74	0.02	FALSE
4	GTEx	Adipose Subcutaneous	HECTD4	0.06	0.00	enet	15	0.02	1.0e-02	-6.3	8.0	1.4e-15	0.65	0.06	0.83	TRUE
5	GTEx	Adipose Subcutaneous	MAPKAPK5-AS1	0.08	0.01	enet	26	0.03	2.1e-03	-7.5	-7.3	3.2e-13	-0.44	0.98	0.01	FALSE
6	GTEx	Adipose Subcutaneous	AC003029.1	0.08	0.07	enet	30	0.05	1.2e-04	-6.3	-7.8	7.9e-15	-0.47	1.00	0.00	TRUE
7	GTEx	Adipose Visceral Omentum	TMEM116	0.21	0.14	lasso	11	0.14	1.1e-07	-5.0	-5.5	4.7e-08	-0.29	1.00	0.00	FALSE
8	GTEx	Adipose Visceral Omentum	RP3-462E2.5	0.15	0.07	enet	8	0.07	1.0e-04	-5.5	6.6	3.5e-11	0.28	0.62	0.12	FALSE
9	GTEx	Adrenal Gland	MAPKAPK5-AS1	0.10	0.08	lasso	12	0.03	3.0e-02	-6.3	-6.4	2.0e-10	-0.39	0.56	0.06	FALSE
10	GTEx	Adrenal Gland	AC003029.1	0.12	0.10	lasso	13	0.07	2.0e-03	-6.3	-6.3	2.2e-10	-0.39	0.80	0.04	FALSE
11	GTEx	Artery Aorta	ALDH2	0.05	0.04	enet	33	0.05	1.3e-03	-3.5	5.4	5.4e-08	0.38	0.59	0.10	FALSE
12	GTEx	Artery Aorta	TMEM116	0.27	0.21	lasso	16	0.20	1.9e-11	-5.0	-5.5	3.9e-08	-0.26	1.00	0.00	FALSE
13	GTEx	Artery Aorta	AC003029.1	0.07	0.01	lasso	7	0.01	5.4e-02	-7.5	-6.6	3.9e-11	-0.43	0.20	0.26	FALSE
14	GTEx	Artery Coronary	TMEM116	0.20	0.09	lasso	4	0.11	1.4e-04	-5.0	-5.2	2.1e-07	-0.27	0.80	0.01	FALSE
15	GTEx	Artery Coronary	MAPKAPK5-AS1	0.16	0.10	lasso	13	0.06	5.7e-03	-6.2	-5.9	3.4e-09	-0.38	0.39	0.07	FALSE
16	GTEx	Artery Tibial	ALDH2	0.08	0.09	lasso	2	0.07	2.7e-06	-6.3	6.4	1.3e-10	0.41	0.94	0.02	FALSE
17	GTEx	Artery Tibial	HECTD4	0.05	0.02	lasso	3	0.01	3.1e-02	9.4	8.9	8.1e-19	0.78	0.01	0.92	FALSE
18	GTEx	Artery Tibial	TMEM116	0.19	0.25	lasso	8	0.21	1.1e-16	-5.1	-5.3	1.3e-07	-0.29	1.00	0.00	FALSE
19	GTEx	Artery Tibial	MAPKAPK5-AS1	0.07	0.05	lasso	11	0.05	9.7e-05	-5.1	-5.8	5.1e-09	-0.33	0.76	0.02	FALSE
20	GTEx	Artery Tibial	AC003029.1	0.05	0.04	lasso	12	0.03	3.6e-03	-6.3	-6.3	2.9e-10	-0.38	0.58	0.04	FALSE
21	GTEx	Brain Caudate basal ganglia	RP3-462E2.5	0.06	0.10	lasso	2	0.06	7.8e-03	-5.0	5.2	1.6e-07	0.26	0.13	0.08	FALSE
22	GTEx	Brain Cerebellar Hemisphere	NAA25	0.11	0.02	enet	10	0.00	2.5e-01	-5.0	-5.1	2.9e-07	-0.33	0.14	0.06	TRUE
23	GTEx	Brain Cerebellar Hemisphere	ADAM1A	0.21	0.01	enet	29	0.03	6.8e-02	-5.5	5.1	2.8e-07	0.39	0.04	0.16	TRUE
24	GTEx	Brain Cerebellum	NAA25	0.12	-0.01	lasso	12	0.00	3.0e-01	-4.9	-6.1	9.7e-10	-0.34	0.12	0.07	FALSE
25	GTEx	Brain Frontal Cortex BA9	ALDH2	0.33	0.04	enet	24	0.09	2.0e-03	-7.6	6.0	2.3e-09	0.33	0.09	0.08	FALSE
26	GTEx	Brain Frontal Cortex BA9	TMEM116	0.10	0.09	lasso	7	0.18	1.9e-05	-6.2	-6.3	2.3e-10	-0.36	0.38	0.04	FALSE
27	GTEx	Brain Hippocampus	RP3-462E2.5	0.15	0.11	lasso	12	0.10	2.0e-03	-5.1	5.2	1.8e-07	0.28	0.36	0.04	FALSE
28	GTEx	Brain Putamen basal ganglia	ALDH2	0.12	0.00	lasso	14	0.02	1.3e-01	-7.8	7.2	7.5e-13	0.39	0.17	0.14	FALSE
29	GTEx	Breast Mammary Tissue	HECTD4	0.06	0.08	lasso	1	0.07	1.6e-04	-6.2	6.2	4.1e-10	0.38	0.32	0.19	FALSE
30	GTEx	Breast Mammary Tissue (Female)	HECTD4	0.06	-0.01	lasso	2	0.01	1.2e-01	-6.2	6.2	7.4e-10	0.35	0.05	0.25	TRUE
31	GTEx	Cells EBV-transformed lymphocytes	RP3-462E2.5	0.21	0.08	lasso	3	0.07	3.4e-03	-5.0	5.2	2.5e-07	0.25	0.14	0.11	FALSE
32	GTEx	Cells Transformed fibroblasts	HECTD4	0.04	0.01	lasso	5	0.00	4.5e-01	-5.0	6.2	6.3e-10	0.35	0.22	0.04	FALSE
33	GTEx	Cells Transformed fibroblasts	MAPKAPK5-AS1	0.06	0.04	lasso	12	0.02	9.5e-03	-6.2	-6.3	3.1e-10	-0.38	0.53	0.03	FALSE
34	GTEx	Cells Transformed fibroblasts	AC003029.1	0.06	0.05	lasso	1	0.03	2.1e-03	-6.2	-6.2	4.1e-10	-0.38	0.66	0.02	FALSE
35	GTEx	Colon Sigmoid	MAPKAPK5-AS1	0.17	0.05	lasso	15	0.07	1.5e-03	-6.2	-6.3	2.2e-10	-0.37	0.51	0.06	FALSE
36	GTEx	Colon Sigmoid	AC003029.1	0.17	0.08	lasso	14	0.09	3.8e-04	-6.2	-6.2	6.1e-10	-0.35	0.60	0.07	FALSE
37	GTEx	Colon Transverse	TMEM116	0.09	0.05	lasso	13	0.02	2.5e-02	-5.1	-5.2	1.6e-07	-0.27	0.20	0.04	FALSE
38	GTEx	Colon Transverse	FAM109A	0.21	0.00	lasso	4	0.01	1.3e-01	-7.4	7.1	9.6e-13	0.41	0.06	0.06	FALSE
39	GTEx	Colon Transverse	MAPKAPK5-AS1	0.16	0.09	lasso	13	0.06	7.1e-04	-6.2	-5.9	4.8e-09	-0.39	0.82	0.02	FALSE
40	GTEx	Colon Transverse	AC003029.1	0.15	0.09	lasso	12	0.07	2.1e-04	-6.3	-6.0	2.4e-09	-0.39	0.81	0.02	FALSE
41	GTEx	Esophagus Gastroesophageal Junction	TMEM116	0.37	0.36	lasso	7	0.33	8.0e-13	-5.1	-5.5	3.7e-08	-0.30	1.00	0.00	FALSE
42	GTEx	Esophagus Gastroesophageal Junction	AC003029.1	0.06	0.03	lasso	3	0.04	1.9e-02	-5.1	-5.4	5.3e-08	-0.38	0.15	0.09	TRUE
43	GTEx	Esophagus Gastroesophageal Junction	RP3-462E2.5	0.12	0.09	lasso	5	0.09	3.5e-04	-5.1	5.6	2.8e-08	0.28	0.20	0.05	FALSE
44	GTEx	Esophagus Mucosa	ALDH2	0.05	0.06	lasso	6	0.07	1.7e-05	-6.3	6.5	8.2e-11	0.43	0.93	0.04	FALSE
45	GTEx	Esophagus Muscularis	HECTD4	0.06	0.03	lasso	4	0.02	1.8e-02	-6.3	6.3	3.5e-10	0.41	0.57	0.07	FALSE
46	GTEx	Esophagus Muscularis	MAPKAPK5-AS1	0.04	0.02	enet	7	0.02	2.7e-02	-6.2	-6.2	5.2e-10	-0.39	0.35	0.03	FALSE
47	GTEx	Esophagus Muscularis	AC003029.1	0.07	0.01	enet	14	0.02	1.4e-02	-6.2	-5.5	3.6e-08	-0.23	0.73	0.01	FALSE
48	GTEx	Esophagus Muscularis	RP3-462E2.5	0.06	0.04	lasso	14	0.03	4.6e-03	-5.1	6.0	2.2e-09	0.32	0.75	0.02	FALSE
49	GTEx	Lung	ALDH2	0.07	0.01	lasso	10	0.02	5.9e-03	-6.2	6.1	9.4e-10	0.39	0.38	0.03	FALSE
50	GTEx	Lung	RP3-462E2.5	0.07	0.03	enet	13	0.03	3.1e-03	-4.9	5.3	1.3e-07	0.26	0.72	0.02	FALSE
51	GTEx	Nerve Tibial	ALDH2	0.05	0.04	lasso	3	0.05	2.4e-04	-6.3	6.3	3.5e-10	0.39	0.76	0.02	FALSE
52	GTEx	Nerve Tibial	HECTD4	0.05	0.01	enet	6	0.01	3.6e-02	-5.3	5.5	4.8e-08	0.41	0.23	0.44	FALSE
53	GTEx	Nerve Tibial	FAM109A	0.26	0.06	lasso	4	0.07	9.5e-06	-7.8	6.0	2.6e-09	0.25	0.31	0.03	FALSE
54	GTEx	Nerve Tibial	MAPKAPK5-AS1	0.05	0.00	lasso	19	0.00	1.4e-01	-5.1	-5.4	7.2e-08	-0.30	0.18	0.05	FALSE
55	GTEx	Nerve Tibial	AC003029.1	0.04	0.00	lasso	23	0.00	4.2e-01	-5.0	-6.4	1.6e-10	-0.38	0.18	0.05	FALSE
56	GTEx	Nerve Tibial	RP3-462E2.5	0.06	0.04	lasso	5	0.05	3.3e-04	-4.9	5.3	9.2e-08	0.26	0.46	0.04	FALSE
57	GTEx	Pituitary	ADAM1A	0.18	0.22	enet	42	0.20	9.6e-06	-5.0	6.6	4.9e-11	0.35	0.80	0.03	FALSE
58	GTEx	Pituitary	RP3-462E2.5	0.15	0.12	lasso	3	0.14	2.3e-04	-6.3	7.2	7.0e-13	0.43	0.23	0.05	FALSE
59	GTEx	Prostate	ADAM1A	0.30	0.11	lasso	16	0.12	5.4e-04	-5.0	5.9	3.6e-09	0.34	0.49	0.22	FALSE
60	GTEx	Prostate	RP3-462E2.5	0.22	0.10	lasso	4	0.13	4.4e-04	-4.9	5.9	2.7e-09	0.23	0.08	0.05	FALSE
61	GTEx	Skin Not Sun Exposed Suprapubic	ALDH2	0.13	0.18	lasso	9	0.16	5.0e-09	-6.2	6.7	1.7e-11	0.40	1.00	0.00	FALSE
62	GTEx	Skin Not Sun Exposed Suprapubic	MAPKAPK5-AS1	0.04	0.00	enet	30	0.00	7.0e-01	-6.3	-7.6	2.7e-14	-0.53	0.21	0.16	FALSE
63	GTEx	Skin Not Sun Exposed Suprapubic	RP3-462E2.5	0.10	0.10	enet	17	0.11	1.2e-06	-5.1	5.2	2.2e-07	0.29	0.99	0.00	FALSE
64	GTEx	Skin Sun Exposed Lower leg	ALDH2	0.10	0.09	enet	13	0.13	6.7e-11	-6.1	8.3	9.6e-17	0.62	0.98	0.02	FALSE
65	GTEx	Skin Sun Exposed Lower leg	MAPKAPK5-AS1	0.09	0.10	lasso	4	0.10	1.1e-08	-6.3	-6.4	1.9e-10	-0.39	1.00	0.00	FALSE
66	GTEx	Skin Sun Exposed Lower leg	AC003029.1	0.09	0.10	lasso	2	0.10	8.8e-09	-6.2	-6.3	2.3e-10	-0.39	1.00	0.00	FALSE
67	GTEx	Stomach	TMEM116	0.13	0.03	lasso	7	0.03	1.6e-02	-4.9	-7.4	1.3e-13	-0.46	0.07	0.15	FALSE
68	GTEx	Testis	MAPKAPK5	0.23	0.12	lasso	5	0.15	3.1e-07	-3.5	5.3	9.4e-08	0.41	0.72	0.22	FALSE
69	GTEx	Testis	BRAP	0.06	0.03	enet	13	0.01	8.7e-02	-6.3	-6.5	1.0e-10	-0.41	0.43	0.08	FALSE
70	GTEx	Testis	MAPKAPK5-AS1	0.07	0.04	lasso	1	0.03	1.3e-02	-6.3	-6.3	2.8e-10	-0.38	0.19	0.13	FALSE
71	GTEx	Testis	AC003029.1	0.10	0.10	lasso	14	0.09	5.8e-05	-6.3	-6.4	1.9e-10	-0.38	0.64	0.12	FALSE
72	GTEx	Thyroid	BRAP	0.07	0.02	lasso	7	0.03	1.1e-03	-7.5	-7.3	2.6e-13	-0.54	0.38	0.40	FALSE
73	GTEx	Thyroid	ALDH2	0.06	0.04	lasso	4	0.05	9.7e-05	-7.5	8.1	5.7e-16	0.47	0.88	0.07	TRUE
74	GTEx	Thyroid	MAPKAPK5-AS1	0.04	0.04	lasso	2	0.03	1.5e-03	-6.2	-6.3	3.9e-10	-0.38	0.62	0.02	FALSE
75	GTEx	Thyroid	AC003029.1	0.04	0.05	lasso	3	0.04	8.3e-04	-6.2	-6.3	2.6e-10	-0.39	0.81	0.04	FALSE
76	GTEx	Thyroid	RP3-462E2.5	0.09	0.07	lasso	5	0.07	1.0e-05	-5.0	5.1	3.0e-07	0.26	0.98	0.00	FALSE
77	GTEx	Whole Blood	ADAM1A	0.08	0.02	lasso	10	0.01	2.7e-02	-5.1	5.6	2.8e-08	0.31	0.35	0.33	FALSE
78	NTR	Blood	TMEM116	0.01	0.00	blup	199	0.00	9.3e-03	-6.2	-5.2	2.0e-07	-0.27	0.64	0.01	FALSE
79	YFS	Blood	ATXN2	0.05	0.02	blup	257	0.04	2.8e-12	-5.5	-6.1	1.1e-09	-0.28	1.00	0.00	FALSE
80	YFS	Blood	SH2B3	0.05	0.01	enet	22	0.02	3.3e-07	-7.5	10.7	1.5e-26	0.64	0.75	0.25	TRUE
81	YFS	Blood	TRAFD1	0.04	0.02	lasso	2	0.01	2.9e-05	4.5	5.8	8.4e-09	0.55	0.09	0.85	FALSE
82	The Cancer Genome Atlas	Breast Invasive Carcinoma	C12orf47	0.01	0.01	blup	31	0.01	7.3e-03	-6.3	-6.2	6.4e-10	-0.38	0.02	0.81	FALSE
83	The Cancer Genome Atlas	Colon Adenocarcinoma	ALDH2	0.07	0.03	lasso	4	0.06	3.9e-04	-3.3	5.4	6.7e-08	0.44	0.02	0.85	FALSE
84	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	ALDH2	0.10	0.00	enet	6	0.00	2.6e-01	4.9	5.7	9.6e-09	0.22	0.01	0.23	FALSE
85	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	C12orf47	0.07	0.04	lasso	2	0.03	1.0e-04	-6.4	-6.5	1.1e-10	-0.36	0.01	0.98	FALSE
86	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	ALDH2	0.10	0.08	blup	30	0.09	4.5e-06	-6.2	5.6	1.6e-08	0.36	0.02	0.97	FALSE
87	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	TMEM116	0.04	0.04	enet	13	0.04	2.7e-03	-4.9	-5.8	5.2e-09	-0.31	0.05	0.12	FALSE
88	The Cancer Genome Atlas	Brain Lower Grade Glioma	ACAD10	0.02	0.02	lasso	3	0.01	7.0e-03	-5.7	-5.8	8.0e-09	-0.50	0.02	0.65	FALSE
89	The Cancer Genome Atlas	Brain Lower Grade Glioma	ALDH2	0.03	0.03	lasso	1	0.03	3.1e-04	-6.1	6.1	8.1e-10	0.38	0.02	0.76	FALSE
90	The Cancer Genome Atlas	Brain Lower Grade Glioma	MAPKAPK5	0.03	0.01	blup	42	0.01	2.5e-02	-3.5	5.6	2.2e-08	0.37	0.04	0.63	TRUE
91	The Cancer Genome Atlas	Brain Lower Grade Glioma	TMEM116	0.03	0.03	blup	43	0.03	8.0e-05	-5.0	-6.8	1.0e-11	-0.43	0.52	0.21	FALSE
92	The Cancer Genome Atlas	Liver Hepatocellular Carcinoma	TMEM116	0.04	0.02	blup	43	0.02	3.5e-02	-5.1	-6.5	7.5e-11	-0.39	0.03	0.12	FALSE
93	The Cancer Genome Atlas	Lung Adenocarcinoma	C12orf47	0.02	0.01	blup	31	0.02	1.7e-03	-6.2	-5.9	3.7e-09	-0.36	0.02	0.87	FALSE
94	The Cancer Genome Atlas	Pancreatic Adenocarcinoma	TMEM116	0.12	0.07	blup	43	0.10	7.6e-05	-5.0	-6.0	2.2e-09	-0.37	0.36	0.21	FALSE
95	The Cancer Genome Atlas	Pheochromocytoma and Paraganglioma	ALDH2	0.08	0.08	blup	32	0.09	2.3e-04	-6.2	6.2	4.7e-10	0.37	0.02	0.94	FALSE
96	The Cancer Genome Atlas	Pheochromocytoma and Paraganglioma	ERP29	0.11	0.03	blup	25	0.05	5.0e-03	-6.4	-8.2	2.0e-16	-0.60	0.01	0.75	FALSE
97	The Cancer Genome Atlas	Pheochromocytoma and Paraganglioma	TMEM116	0.17	0.06	blup	43	0.05	5.6e-03	-5.1	-5.3	1.2e-07	-0.34	0.09	0.20	FALSE
98	The Cancer Genome Atlas	Prostate Adenocarcinoma	ALDH2	0.02	0.02	blup	31	0.01	1.2e-02	-6.2	6.1	8.1e-10	0.35	0.01	0.76	FALSE
99	The Cancer Genome Atlas	Prostate Adenocarcinoma	C12orf47	0.04	0.03	blup	31	0.02	2.8e-03	-6.2	-5.8	8.1e-09	-0.30	0.02	0.88	FALSE
100	The Cancer Genome Atlas	Thyroid Carcinoma	ALDH2	0.03	0.02	blup	31	0.02	6.4e-03	-6.3	5.4	5.3e-08	0.32	0.02	0.83	FALSE