Best TWAS P=1.1e-27 · Best GWAS P=2.91e-37 conditioned to 5.5e-18
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EPDR1 | 0.24 | 0.11 | lasso | 10 | 0.12 | 2.4e-14 | 7.2 | 9.9 | 3.6e-23 | -0.11 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Visceral Omentum | EPDR1 | 0.18 | 0.01 | lasso | 4 | 0.01 | 8.9e-02 | 6.7 | 6.2 | 4.9e-10 | -0.13 | 0.17 | 0.11 | FALSE |
3 | GTEx | Artery Aorta | EPDR1 | 0.51 | 0.38 | lasso | 7 | 0.47 | 1.3e-28 | -1.3 | 5.8 | 6.7e-09 | -0.25 | 1.00 | 0.00 | FALSE |
4 | GTEx | Artery Tibial | EPDR1 | 0.27 | 0.15 | lasso | 12 | 0.16 | 3.4e-12 | 6.7 | 8.3 | 1.4e-16 | -0.26 | 1.00 | 0.00 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | EPDR1 | 0.21 | 0.18 | lasso | 4 | 0.17 | 1.3e-12 | -7.6 | 7.5 | 7.3e-14 | -0.06 | 1.00 | 0.00 | FALSE |
6 | GTEx | Esophagus Muscularis | EPDR1 | 0.35 | 0.08 | lasso | 5 | 0.21 | 1.0e-12 | 7.1 | 8.4 | 4.1e-17 | -0.12 | 1.00 | 0.00 | FALSE |
7 | GTEx | Lung | EPDR1 | 0.15 | 0.06 | enet | 24 | 0.08 | 9.8e-07 | 5.1 | 5.5 | 4.5e-08 | -0.05 | 0.71 | 0.01 | FALSE |
8 | GTEx | Nerve Tibial | EPDR1 | 0.29 | 0.14 | lasso | 4 | 0.23 | 2.7e-16 | 6.5 | 6.7 | 3.0e-11 | -0.13 | 1.00 | 0.00 | FALSE |
9 | GTEx | Thyroid | EPDR1 | 0.19 | 0.06 | enet | 25 | 0.10 | 4.0e-08 | 6.7 | 7.9 | 2.9e-15 | -0.23 | 0.83 | 0.01 | FALSE |
10 | GTEx | Whole Blood | EPDR1 | 0.10 | 0.03 | lasso | 2 | 0.02 | 4.4e-03 | 3.2 | 5.8 | 7.3e-09 | -0.01 | 0.28 | 0.03 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | EPDR1 | 0.17 | 0.06 | lasso | 6 | 0.10 | 2.5e-13 | 3.6 | 9.3 | 1.1e-20 | -0.07 | 1.00 | 0.00 | TRUE |
12 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EPDR1 | 0.06 | 0.01 | enet | 22 | 0.06 | 6.7e-12 | 6.4 | 10.9 | 1.1e-27 | -0.25 | 0.11 | 0.88 | TRUE |
13 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EPDR1 | 0.08 | 0.04 | enet | 3 | 0.05 | 5.4e-06 | 6.7 | 7.9 | 2.7e-15 | -0.25 | 0.86 | 0.00 | TRUE |
14 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | EPDR1 | 0.04 | 0.00 | blup | 113 | 0.01 | 8.5e-03 | 7.2 | 7.8 | 5.9e-15 | -0.26 | 0.04 | 0.08 | FALSE |
15 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | EPDR1 | 0.12 | 0.10 | lasso | 2 | 0.08 | 5.1e-04 | 7.2 | 7.2 | 8.2e-13 | -0.14 | 0.05 | 0.53 | FALSE |
16 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | EPDR1 | 0.09 | 0.10 | lasso | 2 | 0.06 | 2.8e-03 | -10.2 | 10.5 | 8.9e-26 | -0.15 | 0.00 | 0.95 | TRUE |