Best TWAS P=1.18e-07 · Best GWAS P=3.67e-08 conditioned to 0.0151
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | BEGAIN | 0.02 | 0.00 | blup | 41 | 0.01 | 2.7e-02 | 4.5 | -5.3 | 1.2e-07 | -0.72 | 0.03 | 0.26 | TRUE |
| 2 | The Cancer Genome Atlas | Lung Adenocarcinoma | BEGAIN | 0.04 | 0.04 | blup | 41 | 0.04 | 4.8e-05 | 4.5 | -5.3 | 1.5e-07 | -0.78 | 0.19 | 0.75 | FALSE |