485 significantly associated models · 171 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 7135268 | 8695522 | 3 | 2 | 1.9e-25 | 4.6e-24 | 2.3e-03 | 91 | TNFRSF9 VAMP3 |
2 | 1 | 15569712 | 16098866 | 1 | 1 | 1.3e-07 | 1.3e-07 | 5.8e-02 | 87 | CASP9 |
3 | 1 | 19293249 | 22200998 | 5 | 2 | 5.5e-12 | 8.3e-12 | 8.8e-01 | 100 | HP1BP3 HTR6 |
4 | 1 | 37270283 | 38679381 | 1 | 1 | 1.9e-07 | 1.0e-07 | 2.1e-01 | 95 | MEAF6 |
5 | 1 | 92608852 | 94120642 | 1 | 1 | 2.2e-08 | 9.0e-08 | 2.0e-01 | 94 | FAM69A |
6 | 1 | 109126153 | 110834259 | 4 | 2 | 3.0e-10 | 5.7e-12 | NaN | NaN | AMIGO1 GNAI3 |
7 | 1 | 114417843 | 115823387 | 2 | 1 | 1.5e-09 | 1.9e-08 | 1.9e-02 | 82 | TRIM33 |
8 | 1 | 149672809 | 151659071 | 14 | 10 | 3.7e-16 | 6.3e-15 | 1.0e+00 | 100 | ANXA9 C1orf54 CTSS GOLPH3L MRPS21 RPRD2 SETDB1 TARS2 |
9 | 1 | 179566296 | 180095451 | 1 | 1 | 7.7e-08 | 1.5e-04 | 1.3e-03 | 28 | TOR1AIP2 |
10 | 1 | 181669986 | 183058898 | 1 | 1 | 3.1e-08 | 1.2e-39 | 3.5e-33 | 17 | GLUL |
11 | 2 | 43844833 | 45285952 | 1 | 1 | 5.7e-09 | 1.7e-11 | 3.1e-04 | 71 | PREPL |
12 | 2 | 48072855 | 49519654 | 2 | 2 | 1.1e-09 | 2.9e-09 | 1.0e+00 | 100 | LHCGR STON1 |
13 | 2 | 60707588 | 62107632 | 1 | 1 | 1.6e-07 | 2.5e-10 | 2.8e-04 | 67 | AHSA2 |
14 | 2 | 197745121 | 200117777 | 3 | 1 | 2.6e-09 | 1.1e-11 | 3.1e-05 | 62 | PLCL1 |
15 | 2 | 238435241 | 239996179 | 3 | 2 | 7.3e-24 | 3.9e-25 | 1.0e+00 | 100 | KLHL30 TRAF3IP1 |
16 | 3 | 22551223 | 24327558 | 1 | 1 | 1.3e-07 | 1.5e-08 | 3.3e-03 | 73 | UBE2E2 |
17 | 3 | 48012797 | 51320800 | 18 | 12 | 1.1e-14 | 9.2e-12 | NaN | NaN | BSN CYB561D2 HYAL1 RASSF1 SEMA3B-AS1 SEMA3F TCTA U73166.2 |
18 | 3 | 132509832 | 133350222 | 1 | 1 | 1.0e-09 | 8.0e-09 | 1.7e-02 | 83 | TMEM108 |
19 | 4 | 305291 | 2058475 | 5 | 1 | 1.9e-13 | 2.9e-08 | 6.1e-02 | 89 | UVSSA |
20 | 4 | 82578407 | 84048087 | 2 | 2 | 1.0e-08 | 5.0e-11 | 2.1e-03 | 78 | HNRNPD HNRNPDL |
21 | 5 | 86867897 | 88427942 | 1 | 1 | 2.5e-09 | 1.2e-09 | 4.5e-06 | 43 | TMEM161B-AS1 |
22 | 5 | 151529317 | 152030714 | 1 | 1 | 6.1e-09 | 3.2e-12 | 1.8e-05 | 62 | NMUR2 |
23 | 6 | 41058968 | 42450682 | 2 | 3 | 3.8e-09 | 4.2e-10 | 6.9e-02 | 92 | FOXP4 PRICKLE4 |
24 | 6 | 152608067 | 154022718 | 2 | 2 | 7.5e-09 | 2.5e-19 | 4.8e-13 | 35 | MTRF1L RP1-101K10.6 |
25 | 7 | 49817957 | 51215365 | 2 | 1 | 6.1e-08 | 5.4e-11 | 1.0e-04 | 65 | FIGNL1 |
26 | 7 | 101330734 | 103489729 | 14 | 11 | 1.5e-13 | 2.8e-14 | NaN | NaN | ARMC10 NAPEPLD PMPCB POLR2J3 PRKRIP1 RASA4 RP11-514P8.6 RP11-514P8.8 SLC26A5 |
27 | 7 | 115680998 | 116397572 | 1 | 1 | 2.9e-07 | 1.0e-08 | 5.2e-04 | 63 | CAV2 |
28 | 8 | 101232701 | 102664291 | 1 | 1 | 2.7e-10 | 1.2e-09 | 6.8e-01 | 100 | YWHAZ |
29 | 9 | 36590588 | 37277603 | 1 | 1 | 8.7e-11 | 9.4e-10 | 1.8e-02 | 85 | PAX5 |
30 | 9 | 85899677 | 87315117 | 2 | 1 | 2.1e-09 | 3.6e-09 | 3.2e-01 | 97 | RMI1 |
31 | 9 | 114896872 | 115476640 | 1 | 1 | 4.2e-08 | 2.1e-08 | 1.8e-01 | 94 | HSDL2 |
32 | 9 | 126421143 | 127872298 | 1 | 1 | 6.0e-08 | 1.0e-09 | 5.8e-09 | 9 | PSMB7 |
33 | 9 | 131169528 | 132569553 | 4 | 1 | 7.9e-10 | 5.2e-10 | 3.9e-03 | 78 | PPP2R4 |
34 | 9 | 138605924 | 141054761 | 4 | 2 | 6.2e-10 | 5.8e-08 | 6.1e-02 | 88 | MRPL41 SDCCAG3 |
35 | 10 | 103807817 | 105275242 | 1 | 1 | 2.3e-07 | 3.2e-06 | 5.6e-01 | 98 | C10orf26 |
36 | 10 | 122989048 | 124407934 | 1 | 1 | 1.9e-07 | 5.0e-08 | 5.6e-05 | 45 | RP11-500G22.2 |
37 | 11 | 29713564 | 31288160 | 1 | 1 | 5.1e-09 | 2.5e-09 | 7.2e-03 | 80 | MPPED2 |
38 | 11 | 46578400 | 48028343 | 4 | 1 | 7.3e-15 | 1.1e-07 | 4.6e-01 | 98 | MADD |
39 | 11 | 56716782 | 58178587 | 2 | 1 | 5.6e-08 | 7.7e-10 | 2.2e-06 | 41 | AP000662.4 |
40 | 11 | 65151449 | 66919278 | 4 | 2 | 6.2e-08 | 2.5e-07 | 9.3e-02 | 89 | CTD-3074O7.5 PACS1 |
41 | 12 | 32831091 | 34826574 | 2 | 3 | 1.3e-18 | 1.1e-25 | 4.3e-05 | 85 | ALG10 SYT10 |
42 | 12 | 38353816 | 39998144 | 3 | 2 | 5.4e-24 | 4.4e-26 | 4.7e-02 | 96 | ALG10B RP11-396F22.1 |
43 | 12 | 106675236 | 108179234 | 2 | 2 | 1.6e-07 | 1.8e-08 | 3.8e-03 | 74 | CRY1 MTERFD3 |
44 | 12 | 111385296 | 113517494 | 3 | 1 | 4.6e-08 | 5.3e-09 | 3.5e-02 | 87 | HECTD4 |
45 | 12 | 120242845 | 121660787 | 2 | 1 | 2.9e-08 | 3.4e-07 | 5.1e-02 | 85 | COQ5 |
46 | 13 | 76867667 | 78295338 | 2 | 1 | 2.8e-16 | 3.5e-17 | 1.0e+00 | 100 | CLN5 |
47 | 13 | 93183161 | 95758325 | 1 | 1 | 9.5e-09 | 1.2e-08 | 1.0e+00 | 100 | GPC6 |
48 | 14 | 60517036 | 62134085 | 1 | 1 | 1.1e-07 | 9.4e-06 | 1.9e-02 | 72 | MNAT1 |
49 | 14 | 73724767 | 75366447 | 2 | 1 | 9.9e-08 | 5.7e-07 | 1.0e+00 | 100 | LIN52 |
50 | 14 | 88690885 | 89265337 | 1 | 1 | 5.2e-08 | 3.9e-07 | 6.9e-02 | 87 | PTPN21 |
51 | 14 | 100766664 | 101281436 | 1 | 1 | 1.2e-07 | 3.7e-08 | 1.5e-02 | 80 | BEGAIN |
52 | 16 | 52828325 | 54235440 | 1 | 1 | 2.7e-07 | 1.5e-20 | 9.0e-15 | 30 | AKTIP |
53 | 16 | 55697964 | 57157206 | 1 | 1 | 1.1e-08 | 1.1e-15 | 3.1e-10 | 38 | AMFR |
54 | 16 | 71380320 | 72800567 | 1 | 1 | 4.2e-08 | 8.7e-10 | 5.3e-03 | 79 | TXNL4B |
55 | 17 | 7379650 | 8823768 | 3 | 1 | 3.6e-15 | 2.8e-15 | 1.0e+00 | 100 | TMEM107 |
56 | 17 | 33204020 | 35123256 | 4 | 1 | 1.4e-10 | 7.2e-09 | 1.0e+00 | 100 | AP2B1 |
57 | 17 | 45337417 | 46721406 | 1 | 1 | 1.1e-07 | 1.4e-06 | 4.2e-01 | 97 | RP11-6N17.6 |
58 | 17 | 56362067 | 57989860 | 3 | 1 | 1.2e-08 | 5.5e-08 | 1.7e-01 | 94 | TRIM37 |
59 | 17 | 60399470 | 62212520 | 2 | 1 | 5.0e-08 | 4.3e-09 | 1.1e-03 | 69 | CYB561 |
60 | 18 | 52750469 | 54144903 | 1 | 1 | 8.9e-11 | 1.4e-08 | 2.5e-02 | 84 | RP11-397A16.2 |
61 | 18 | 56118999 | 57521875 | 1 | 1 | 1.4e-12 | 3.6e-16 | 5.3e-05 | 75 | SEC11C |
62 | 19 | 17412366 | 18811966 | 1 | 1 | 4.7e-08 | 4.3e-08 | 7.9e-04 | 62 | ARRDC2 |
63 | 19 | 36694438 | 37221835 | 1 | 1 | 1.0e-07 | 2.3e-05 | 3.7e-01 | 96 | ZNF566 |
64 | 19 | 42331992 | 42820530 | 1 | 1 | 3.3e-09 | 2.2e-06 | 6.3e-01 | 99 | ZNF574 |
65 | 19 | 45313715 | 46693262 | 1 | 1 | 7.9e-08 | 2.5e-06 | 1.1e-05 | 13 | PPM1N |
66 | 19 | 46754714 | 47235715 | 1 | 1 | 2.3e-07 | 5.5e-08 | 1.3e-02 | 79 | PNMAL2 |
67 | 19 | 58244898 | 59095126 | 3 | 1 | 1.5e-07 | 2.1e-07 | 4.1e-01 | 98 | ZNF584 |
68 | 22 | 40500313 | 41047764 | 2 | 1 | 5.8e-16 | 1.3e-16 | 1.0e+00 | 100 | SGSM3 |
69 | 22 | 41498627 | 43226599 | 3 | 1 | 1.0e-08 | 1.0e-09 | 2.2e-07 | 28 | SLC25A5P1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
The Cancer Genome Atlas | Esophageal Carcinoma | 3 | 0.437 | 2.6 |
GTEx | Adrenal Gland | 3 | 0.206 | 2.5 |
GTEx | Artery Coronary | 6 | 0.507 | 2.5 |
GTEx | Cells EBV-transformed lymphocytes | 0 | 0.000 | 2.5 |
GTEx | Colon Transverse | 11 | 0.533 | 2.5 |
GTEx | Lung | 12 | 0.418 | 2.5 |
GTEx | Pituitary | 5 | 0.448 | 2.5 |
GTEx | Small Intestine Terminal Ileum | 2 | 0.433 | 2.5 |
GTEx | Uterus | 3 | 0.529 | 2.5 |
GTEx | Adipose Subcutaneous | 12 | 0.344 | 2.4 |
GTEx | Artery Aorta | 9 | 0.302 | 2.4 |
GTEx | Brain Cerebellum | 8 | 0.403 | 2.4 |
GTEx | Brain Cortex | 4 | 0.387 | 2.4 |
GTEx | Brain Frontal Cortex BA9 | 1 | 0.108 | 2.4 |
GTEx | Brain Hypothalamus | 0 | 0.000 | 2.4 |
GTEx | Brain Putamen basal ganglia | 6 | 0.962 | 2.4 |
GTEx | Breast Mammary Tissue | 11 | 0.557 | 2.4 |
GTEx | Breast Mammary Tissue (Female) | 7 | 0.426 | 2.4 |
GTEx | Cells Transformed fibroblasts | 13 | 0.310 | 2.4 |
GTEx | Esophagus Gastroesophageal Junction | 4 | 0.277 | 2.4 |
GTEx | Esophagus Mucosa | 11 | 0.331 | 2.4 |
GTEx | Esophagus Muscularis | 15 | 0.464 | 2.4 |
GTEx | Heart Atrial Appendage | 6 | 0.380 | 2.4 |
GTEx | Heart Left Ventricle | 9 | 0.588 | 2.4 |
GTEx | Liver | 2 | 0.279 | 2.4 |
GTEx | Muscle Skeletal | 9 | 0.311 | 2.4 |
GTEx | Nerve Tibial | 15 | 0.347 | 2.4 |
GTEx | Pancreas | 7 | 0.429 | 2.4 |
GTEx | Prostate | 4 | 0.480 | 2.4 |
GTEx | Skin Not Sun Exposed Suprapubic | 8 | 0.325 | 2.4 |
GTEx | Skin Sun Exposed Lower leg | 11 | 0.302 | 2.4 |
GTEx | Spleen | 6 | 0.425 | 2.4 |
GTEx | Stomach | 3 | 0.206 | 2.4 |
GTEx | Testis | 12 | 0.380 | 2.4 |
GTEx | Thyroid | 14 | 0.350 | 2.4 |
ROSMAP | Brain Pre-frontal Cortex | 16 | 0.364 | 2.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 3 | 0.271 | 2.4 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 2 | 0.187 | 2.4 |
GTEx | Adipose Visceral Omentum | 5 | 0.245 | 2.3 |
GTEx | Artery Tibial | 11 | 0.293 | 2.3 |
GTEx | Brain Caudate basal ganglia | 3 | 0.326 | 2.3 |
GTEx | Brain Cerebellar Hemisphere | 5 | 0.336 | 2.3 |
GTEx | Brain Hippocampus | 0 | 0.000 | 2.3 |
GTEx | Brain Nucleus accumbens basal ganglia | 2 | 0.231 | 2.3 |
GTEx | Colon Sigmoid | 1 | 0.068 | 2.3 |
GTEx | Whole Blood | 8 | 0.402 | 2.3 |
NTR | Blood | 6 | 0.250 | 2.3 |
CommonMind | Brain Pre-frontal Cortex | 13 | 0.242 | 2.3 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 17 | 0.385 | 2.3 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 5 | 0.242 | 2.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 10 | 0.366 | 2.3 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 5 | 0.243 | 2.3 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 13 | 0.302 | 2.3 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 17 | 0.367 | 2.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.187 | 2.3 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 6 | 0.356 | 2.3 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 6 | 0.469 | 2.3 |
The Cancer Genome Atlas | Thyroid Carcinoma | 20 | 0.387 | 2.3 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.391 | 2.3 |
GTEx | Ovary | 0 | 0.000 | 2.2 |
YFS | Blood | 7 | 0.152 | 2.2 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 7 | 0.422 | 2.2 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 2.2 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 14 | 0.341 | 2.2 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 6 | 0.239 | 2.2 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 3 | 0.188 | 2.2 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 2 | 0.120 | 2.2 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 2.2 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 1 | 0.144 | 2.2 |
GTEx | Breast Mammary Tissue (Male) | 1 | 0.084 | 2.1 |
GTEx | Vagina | 0 | 0.000 | 2.1 |
METSIM | Adipose | 6 | 0.130 | 2.1 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 7 | 0.238 | 2.1 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 2 | 0.195 | 2.0 |