TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Blood White Count
:
←
→
chr12:53,864,855-55,276,396
Best TWAS P=9.5e-08 · Best GWAS P=1.99e-08 conditioned to 0.553
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
HOXC6
0.03
0.02
blup
50
0.03
3.9e-04
-4.4
5.3
9.5e-08
-0.78
0.04
0.78
TRUE
1
GTEx
Testis
SMUG1
0.30
0.17
enet
20
0.24
3.6e-11
4.1
5.3
1.2e-07
-0.21
0.48
0.45
TRUE
2
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
HOXC5
0.02
0.00
blup
51
0.01
2.4e-02
-3.9
-5.2
2.1e-07
0.59
0.02
0.06
FALSE