TWAS
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About
Usage
Models
Genes
Traits
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Traits
:
Blood White Count
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chr2:53,989,244-56,155,990
Best TWAS P=2.92e-09 · Best GWAS P=4.55e-09 conditioned to 0.00542
54M
54.5M
55M
55.5M
56M
0
2
4
6
8
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
NTR
Blood
SPTBN1
0.06
0.04
bslmm
640
0.04
3.2e-14
2.1
5.9
2.9e-09
0.62
0.99
0.00
TRUE
3
GTEx
Whole Blood
SPTBN1
0.13
0.04
lasso
6
0.08
5.7e-08
5.6
5.9
3.3e-09
0.88
0.01
0.99
FALSE
2
GTEx
Stomach
CLHC1
0.59
0.36
enet
42
0.44
9.3e-23
4.1
5.4
6.6e-08
0.17
0.93
0.06
FALSE
1
GTEx
Small Intestine Terminal Ileum
CLHC1
0.51
0.29
lasso
4
0.30
2.3e-07
4.1
5.2
1.7e-07
0.10
0.31
0.17
FALSE