TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Blood Platelet Count
:
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chr5:122,045,488-123,432,250
Best TWAS P=2.3e-10 · Best GWAS P=6.15e-12 conditioned to 0.00686
122M
122.2M
122.4M
122.6M
122.8M
123M
123.2M
123.4M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Prostate Adenocarcinoma
CEP120
0.10
0.14
blup
70
0.14
2.6e-14
6.8
-6.3
2.3e-10
-0.94
0.01
0.99
TRUE
3
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
CEP120
0.03
0.02
enet
5
0.04
7.3e-05
5.1
-6.1
1.0e-09
-0.70
0.04
0.80
FALSE
2
The Cancer Genome Atlas
Colon Adenocarcinoma
CEP120
0.06
0.02
blup
70
0.04
3.6e-03
-4.4
-5.8
7.8e-09
-0.76
0.03
0.80
FALSE
1
GTEx
Artery Aorta
KRT8P33
0.10
0.04
lasso
6
0.05
9.1e-04
5.1
-5.5
3.0e-08
-0.67
0.04
0.85
FALSE