TWAS
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Usage
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Genes
Traits
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Traits
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Blood Platelet Count
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chr5:176,043,333-177,260,129
Best TWAS P=8.11e-11 · Best GWAS P=2.58e-20 conditioned to 4.03e-07
176M
176.2M
176.4M
176.6M
176.8M
177M
177.2M
0
5
10
15
20
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Brain Cortex
MXD3
0.47
0.20
lasso
10
0.22
7.7e-07
-3.7
-6.5
8.1e-11
-0.49
0.02
0.82
TRUE
3
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
RGS14
0.19
0.05
enet
16
0.05
6.6e-04
-2.6
5.1
2.7e-07
0.42
0.12
0.34
TRUE
2
GTEx
Lung
MXD3
0.20
0.12
lasso
10
0.12
1.8e-09
-3.7
-5.4
5.6e-08
-0.33
0.95
0.04
FALSE