Best TWAS P=3.61e-08 · Best GWAS P=2.38e-08 conditioned to 0.173
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Colon Transverse | KIAA1109 | 0.25 | -0.01 | enet | 16 | 0.00 | 4.1e-01 | 5.6 | -5.5 | 3.6e-08 | -0.91 | 0.03 | 0.70 | TRUE |
2 | The Cancer Genome Atlas | Thyroid Carcinoma | KIAA1109 | 0.05 | 0.04 | enet | 3 | 0.05 | 5.4e-06 | 5.6 | -5.5 | 4.8e-08 | -0.97 | 0.01 | 0.99 | FALSE |