TWAS
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Models
Genes
Traits
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Traits
:
Depressed Affect (Nagel 2018)
:
→
chr1:7,715,776-9,571,422
Best TWAS P=3.28e-08 · Best GWAS P=1.75e-08 conditioned to 1
8M
8.5M
9M
9.5M
0
2
4
6
8
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Thyroid
RP5-1115A15.1
0.09
0.12
lasso
2
0.09
1.5e-07
5.5
-5.5
3.3e-08
-0.99
0.00
1.00
TRUE
2
GTEx
Lung
RP5-1115A15.1
0.05
0.08
lasso
1
0.07
1.0e-05
5.5
-5.5
4.2e-08
-1.00
0.00
1.00
FALSE
4
YFS
Blood
RERE
0.09
0.15
lasso
4
0.16
5.7e-49
5.6
-5.2
1.9e-07
-0.98
0.00
1.00
FALSE
1
GTEx
Esophagus Mucosa
RP5-1115A15.1
0.06
0.06
lasso
4
0.05
3.0e-04
4.9
-5.2
2.1e-07
-0.95
0.01
0.96
FALSE