Best TWAS P=3.42e-13 · Best GWAS P=1.26e-11 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | MANEAL | 0.06 | 0.00 | blup | 456 | 0.01 | 2.1e-02 | 5.8 | -5.9 | 3.6e-09 | -0.58 | 0.03 | 0.62 | FALSE |
2 | GTEx | Adipose Subcutaneous | INPP5B | 0.44 | 0.33 | lasso | 15 | 0.36 | 3.4e-30 | 6.4 | 6.4 | 1.2e-10 | 0.67 | 0.02 | 0.98 | FALSE |
3 | GTEx | Adipose Subcutaneous | RP11-109P14.10 | 0.28 | 0.21 | lasso | 4 | 0.22 | 6.0e-18 | 6.4 | 5.9 | 4.0e-09 | 0.58 | 0.02 | 0.98 | FALSE |
4 | GTEx | Adipose Visceral Omentum | INPP5B | 0.34 | 0.14 | lasso | 4 | 0.25 | 3.7e-13 | -3.1 | 5.8 | 9.0e-09 | 0.65 | 0.10 | 0.90 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | INPP5B | 0.45 | 0.23 | lasso | 4 | 0.29 | 3.0e-08 | 6.4 | 7.2 | 4.7e-13 | 0.87 | 0.00 | 0.99 | FALSE |
6 | GTEx | Brain Cerebellum | INPP5B | 0.41 | 0.19 | lasso | 9 | 0.28 | 9.2e-09 | 6.7 | 6.5 | 5.7e-11 | 0.90 | 0.00 | 0.99 | FALSE |
7 | GTEx | Breast Mammary Tissue | INPP5B | 0.32 | 0.20 | lasso | 7 | 0.20 | 2.1e-10 | 6.4 | 6.0 | 1.8e-09 | 0.66 | 0.02 | 0.98 | FALSE |
8 | GTEx | Breast Mammary Tissue (Male) | INPP5B | 0.39 | 0.35 | lasso | 4 | 0.30 | 9.6e-08 | 6.4 | 6.3 | 3.6e-10 | 0.62 | 0.03 | 0.95 | FALSE |
9 | GTEx | Esophagus Mucosa | INPP5B | 0.28 | 0.26 | lasso | 3 | 0.25 | 4.5e-17 | 6.4 | 6.6 | 3.2e-11 | 0.71 | 0.02 | 0.98 | FALSE |
10 | GTEx | Esophagus Mucosa | RP11-109P14.10 | 0.14 | 0.12 | lasso | 1 | 0.11 | 1.5e-07 | 6.4 | 6.4 | 1.9e-10 | 0.64 | 0.02 | 0.98 | FALSE |
11 | GTEx | Lung | INPP5B | 0.32 | 0.22 | lasso | 6 | 0.26 | 8.4e-20 | 6.4 | 6.4 | 1.4e-10 | 0.66 | 0.02 | 0.98 | FALSE |
12 | GTEx | Lung | RP11-109P14.10 | 0.15 | 0.03 | enet | 14 | 0.12 | 9.2e-10 | 3.5 | 5.6 | 1.9e-08 | 0.51 | 0.12 | 0.87 | FALSE |
13 | GTEx | Skin Not Sun Exposed Suprapubic | INPP5B | 0.13 | 0.12 | lasso | 4 | 0.13 | 1.3e-07 | 6.8 | 7.1 | 1.3e-12 | 0.96 | 0.00 | 1.00 | FALSE |
14 | GTEx | Skin Sun Exposed Lower leg | INPP5B | 0.21 | 0.15 | lasso | 4 | 0.18 | 7.0e-15 | 6.7 | 7.3 | 3.4e-13 | 0.95 | 0.00 | 1.00 | TRUE |
15 | GTEx | Spleen | INPP5B | 0.77 | 0.51 | lasso | 7 | 0.66 | 2.5e-22 | 6.4 | 5.5 | 4.8e-08 | 0.54 | 0.04 | 0.96 | FALSE |
16 | GTEx | Testis | AKIRIN1 | 0.41 | 0.15 | enet | 33 | 0.23 | 1.1e-10 | 4.7 | -5.4 | 7.5e-08 | 0.02 | 0.01 | 0.98 | TRUE |
17 | GTEx | Thyroid | INPP5B | 0.14 | 0.06 | lasso | 4 | 0.09 | 1.0e-07 | 6.4 | 5.9 | 3.0e-09 | 0.66 | 0.04 | 0.96 | FALSE |
18 | METSIM | Adipose | INPP5B | 0.31 | 0.33 | enet | 21 | 0.35 | 2.4e-54 | 6.3 | 5.3 | 9.0e-08 | 0.52 | 0.03 | 0.97 | FALSE |
19 | ROSMAP | Brain Pre-frontal Cortex | INPP5B | 0.22 | 0.16 | lasso | 3 | 0.20 | 8.0e-25 | 6.3 | 6.6 | 3.4e-11 | 0.75 | 0.03 | 0.97 | FALSE |
20 | YFS | Blood | AKIRIN1 | 0.22 | 0.14 | enet | 44 | 0.26 | 3.0e-83 | -4.1 | -5.1 | 3.1e-07 | 0.06 | 0.09 | 0.78 | FALSE |
21 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | EPHA10 | 0.21 | 0.16 | enet | 7 | 0.07 | 1.9e-03 | 6.7 | -6.7 | 2.1e-11 | -0.97 | 0.00 | 0.99 | FALSE |