Best TWAS P=5.64e-11 · Best GWAS P=4.58e-09 conditioned to 0.375
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Cerebellar Hemisphere | DCST2 | 0.45 | 0.10 | lasso | 6 | 0.16 | 6.6e-05 | 5.2 | -5.9 | 3.8e-09 | -0.78 | 0.02 | 0.93 | FALSE |
2 | GTEx | Brain Cerebellum | DCST2 | 0.48 | 0.27 | lasso | 9 | 0.31 | 6.0e-10 | 5.3 | -6.5 | 5.6e-11 | -0.82 | 0.01 | 0.99 | TRUE |
3 | GTEx | Brain Nucleus accumbens basal ganglia | DCST2 | 0.28 | 0.04 | lasso | 5 | 0.13 | 2.0e-04 | -5.2 | -5.8 | 5.0e-09 | -0.73 | 0.02 | 0.85 | FALSE |
4 | GTEx | Brain Putamen basal ganglia | DCST2 | 0.56 | 0.05 | enet | 11 | 0.10 | 2.8e-03 | 5.2 | -5.8 | 8.2e-09 | -0.91 | 0.01 | 0.96 | FALSE |
5 | GTEx | Breast Mammary Tissue (Male) | RP11-307C12.11 | 0.21 | -0.01 | lasso | 3 | 0.00 | 2.5e-01 | 5.1 | -5.3 | 8.6e-08 | -0.55 | 0.03 | 0.17 | FALSE |
6 | GTEx | Nerve Tibial | PBXIP1 | 0.08 | 0.02 | enet | 9 | 0.04 | 5.3e-04 | 3.3 | -5.3 | 1.2e-07 | -0.59 | 0.25 | 0.68 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | ADAM15 | 0.14 | 0.09 | lasso | 4 | 0.08 | 6.1e-07 | -5.2 | 5.2 | 2.0e-07 | 0.45 | 0.16 | 0.84 | FALSE |
8 | GTEx | Thyroid | DCST2 | 0.16 | 0.12 | lasso | 2 | 0.11 | 6.4e-09 | 5.2 | -5.7 | 1.3e-08 | -0.84 | 0.11 | 0.89 | FALSE |
9 | GTEx | Whole Blood | ADAM15 | 0.10 | 0.00 | lasso | 13 | 0.00 | 1.5e-01 | 5.7 | 5.3 | 1.2e-07 | 0.85 | 0.02 | 0.93 | FALSE |
10 | METSIM | Adipose | DCST2 | 0.04 | 0.04 | enet | 12 | 0.04 | 4.3e-07 | 5.4 | -6.1 | 8.6e-10 | -0.77 | 0.02 | 0.98 | FALSE |
11 | NTR | Blood | ZBTB7B | 0.02 | 0.02 | lasso | 1 | 0.01 | 5.4e-05 | -5.4 | -5.4 | 7.7e-08 | -0.73 | 0.05 | 0.94 | FALSE |
12 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LENEP | 0.01 | 0.00 | blup | 37 | 0.01 | 1.6e-03 | 4.9 | -5.8 | 6.9e-09 | -0.60 | 0.02 | 0.32 | FALSE |
13 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ZBTB7B | 0.05 | 0.06 | lasso | 2 | 0.05 | 1.8e-06 | -5.2 | 5.2 | 1.7e-07 | 0.49 | 0.13 | 0.82 | FALSE |