Best TWAS P=3.36e-35 · Best GWAS P=6.48e-35 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ATM | 0.05 | 0.10 | lasso | 4 | 0.10 | 6.6e-12 | -12.25 | -12.3 | 9.7e-35 | 0.99 | 0.04 | 0.96 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | C11orf65 | 0.07 | 0.01 | blup | 371 | 0.03 | 1.9e-04 | 3.62 | 7.2 | 8.2e-13 | -0.52 | 0.33 | 0.14 | FALSE |
3 | GTEx | Adipose Visceral Omentum | KDELC2 | 0.14 | 0.11 | lasso | 3 | 0.08 | 4.5e-05 | 2.64 | -5.5 | 4.2e-08 | 0.45 | 0.25 | 0.67 | FALSE |
4 | GTEx | Artery Tibial | NPAT | 0.06 | 0.06 | lasso | 4 | 0.05 | 5.6e-05 | -11.91 | 11.9 | 1.1e-32 | -0.98 | 0.10 | 0.88 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | ACAT1 | 0.18 | 0.15 | lasso | 8 | 0.21 | 1.7e-15 | -7.79 | -9.0 | 2.5e-19 | 0.85 | 0.08 | 0.92 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | ATM | 0.07 | 0.06 | lasso | 2 | 0.05 | 2.2e-04 | -12.25 | -12.3 | 8.9e-35 | 0.99 | 0.03 | 0.96 | FALSE |
7 | GTEx | Esophagus Mucosa | ACAT1 | 0.10 | 0.12 | lasso | 5 | 0.13 | 4.9e-09 | 4.72 | -8.5 | 1.6e-17 | 0.80 | 0.09 | 0.91 | FALSE |
8 | GTEx | Esophagus Muscularis | ATM | 0.07 | 0.07 | lasso | 4 | 0.04 | 1.6e-03 | -11.79 | -11.8 | 5.9e-32 | 0.97 | 0.07 | 0.88 | FALSE |
9 | GTEx | Esophagus Muscularis | RP11-144G7.2 | 0.06 | 0.04 | lasso | 2 | 0.03 | 3.5e-03 | 4.72 | -7.2 | 4.9e-13 | 0.67 | 0.10 | 0.62 | FALSE |
10 | GTEx | Heart Left Ventricle | KDELC2 | 0.07 | 0.05 | lasso | 4 | 0.06 | 3.8e-04 | 2.53 | -6.2 | 5.0e-10 | 0.43 | 0.14 | 0.41 | FALSE |
11 | GTEx | Muscle Skeletal | ACAT1 | 0.28 | 0.16 | lasso | 4 | 0.17 | 1.1e-16 | -8.95 | -8.1 | 6.2e-16 | 0.51 | 1.00 | 0.00 | FALSE |
12 | GTEx | Muscle Skeletal | ATM | 0.10 | 0.00 | enet | 24 | 0.01 | 1.4e-02 | -8.95 | -6.7 | 1.6e-11 | 0.53 | 0.10 | 0.13 | FALSE |
13 | GTEx | Muscle Skeletal | CUL5 | 0.08 | 0.01 | lasso | 5 | 0.03 | 8.8e-04 | -8.95 | -7.8 | 4.4e-15 | 0.45 | 0.26 | 0.20 | FALSE |
14 | GTEx | Muscle Skeletal | RP11-144G7.2 | 0.22 | 0.19 | lasso | 5 | 0.17 | 1.2e-16 | -8.95 | -8.6 | 1.2e-17 | 0.60 | 1.00 | 0.00 | FALSE |
15 | GTEx | Nerve Tibial | ACAT1 | 0.05 | 0.02 | lasso | 5 | 0.00 | 9.0e-01 | -12.25 | -12.2 | 5.2e-34 | 0.99 | 0.04 | 0.93 | FALSE |
16 | GTEx | Pituitary | ACAT1 | 0.16 | 0.09 | lasso | 10 | 0.08 | 5.3e-03 | 6.03 | 5.5 | 4.4e-08 | -0.58 | 0.13 | 0.50 | FALSE |
17 | GTEx | Skin Not Sun Exposed Suprapubic | ACAT1 | 0.11 | 0.12 | lasso | 5 | 0.08 | 2.6e-05 | 4.72 | -5.4 | 7.9e-08 | 0.58 | 0.75 | 0.10 | FALSE |
18 | GTEx | Thyroid | NPAT | 0.08 | 0.01 | enet | 32 | 0.04 | 8.1e-04 | 0.97 | 6.1 | 8.9e-10 | -0.67 | 0.06 | 0.83 | FALSE |
19 | NTR | Blood | ACAT1 | 0.03 | 0.02 | bslmm | 369 | 0.02 | 5.5e-08 | 4.69 | 7.5 | 5.2e-14 | -0.49 | 0.96 | 0.03 | FALSE |
20 | NTR | Blood | NPAT | 0.02 | 0.01 | blup | 380 | 0.01 | 8.8e-05 | -12.23 | 10.3 | 5.6e-25 | -0.81 | 0.05 | 0.95 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | ATM | 0.05 | 0.05 | blup | 370 | 0.05 | 5.8e-07 | -12.25 | -10.9 | 6.8e-28 | 0.92 | 0.04 | 0.96 | FALSE |
22 | YFS | Blood | ACAT1 | 0.20 | 0.21 | enet | 32 | 0.34 | 1.3e-114 | -11.79 | -8.8 | 1.7e-18 | 0.82 | 0.34 | 0.66 | FALSE |
23 | YFS | Blood | NPAT | 0.06 | 0.08 | lasso | 8 | 0.09 | 3.2e-28 | -12.23 | 12.0 | 2.1e-33 | -0.93 | 0.06 | 0.94 | FALSE |
24 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C11orf65 | 0.02 | 0.01 | blup | 75 | 0.02 | 7.4e-03 | -11.93 | 11.7 | 1.8e-31 | -0.94 | 0.03 | 0.56 | FALSE |
25 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | C11orf65 | 0.03 | 0.01 | blup | 75 | 0.02 | 4.3e-03 | -12.28 | 12.3 | 1.2e-34 | -0.95 | 0.03 | 0.76 | FALSE |
26 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ATM | 0.05 | 0.03 | blup | 72 | 0.03 | 2.9e-04 | -12.24 | -12.4 | 3.4e-35 | 0.98 | 0.04 | 0.96 | TRUE |
27 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ATM | 0.04 | 0.03 | lasso | 2 | 0.03 | 5.7e-03 | -12.26 | -12.3 | 1.5e-34 | 0.99 | 0.03 | 0.71 | FALSE |
28 | The Cancer Genome Atlas | Thyroid Carcinoma | ATM | 0.08 | 0.05 | lasso | 4 | 0.05 | 6.5e-06 | -12.24 | -12.1 | 1.2e-33 | 0.95 | 0.05 | 0.94 | FALSE |