Best TWAS P=1.39e-15 · Best GWAS P=1.17e-10 conditioned to 0.831
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | PSEN1 | 0.07 | 0.03 | enet | 7 | 0.02 | 5.1e-03 | 5.0 | -6.1 | 1.1e-09 | -0.48 | 0.10 | 0.53 | FALSE |
2 | GTEx | Artery Aorta | RBM25 | 0.11 | -0.01 | enet | 10 | 0.00 | 1.9e-01 | 3.6 | 6.1 | 1.0e-09 | 0.55 | 0.07 | 0.38 | FALSE |
3 | GTEx | Artery Tibial | PSEN1 | 0.08 | 0.07 | lasso | 6 | 0.05 | 4.1e-05 | 5.0 | -5.3 | 1.4e-07 | -0.51 | 0.13 | 0.83 | FALSE |
4 | GTEx | Brain Cerebellar Hemisphere | DCAF4 | 0.41 | 0.34 | enet | 19 | 0.36 | 4.0e-10 | 4.8 | 6.4 | 1.6e-10 | 0.69 | 0.02 | 0.97 | FALSE |
5 | GTEx | Brain Cerebellum | DCAF4 | 0.38 | 0.17 | lasso | 6 | 0.34 | 7.5e-11 | 4.8 | 6.2 | 5.4e-10 | 0.70 | 0.05 | 0.95 | FALSE |
6 | GTEx | Cells EBV-transformed lymphocytes | RP11-109N23.6 | 0.22 | 0.12 | lasso | 8 | 0.16 | 5.1e-06 | -3.2 | -5.1 | 2.7e-07 | -0.31 | 0.13 | 0.76 | FALSE |
7 | GTEx | Nerve Tibial | PSEN1 | 0.10 | 0.04 | lasso | 5 | 0.04 | 9.3e-04 | 4.7 | -5.3 | 1.5e-07 | -0.41 | 0.34 | 0.20 | FALSE |
8 | GTEx | Whole Blood | PSEN1 | 0.15 | 0.08 | enet | 15 | 0.14 | 1.2e-12 | 5.3 | -7.0 | 2.4e-12 | -0.25 | 0.19 | 0.80 | FALSE |
9 | GTEx | Whole Blood | RP4-647C14.2 | 0.07 | 0.05 | lasso | 3 | 0.06 | 7.0e-06 | 4.8 | -6.1 | 1.1e-09 | -0.39 | 0.24 | 0.18 | FALSE |
10 | METSIM | Adipose | PSEN1 | 0.05 | 0.03 | lasso | 3 | 0.03 | 9.9e-06 | 6.4 | -6.9 | 3.7e-12 | -0.91 | 0.00 | 1.00 | FALSE |
11 | NTR | Blood | PSEN1 | 0.03 | 0.01 | bslmm | 423 | 0.01 | 3.6e-05 | 5.3 | -8.0 | 1.4e-15 | -0.45 | 0.45 | 0.49 | TRUE |
12 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | DCAF4 | 0.04 | 0.00 | blup | 83 | 0.01 | 5.8e-02 | -2.1 | 5.8 | 6.0e-09 | 0.46 | 0.03 | 0.16 | TRUE |
13 | The Cancer Genome Atlas | Esophageal Carcinoma | DCAF4 | 0.12 | 0.03 | enet | 14 | 0.05 | 9.5e-03 | 4.8 | 5.8 | 6.6e-09 | 0.50 | 0.04 | 0.45 | FALSE |
14 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DCAF4 | 0.04 | 0.02 | blup | 83 | 0.03 | 1.2e-04 | 6.0 | 5.5 | 4.7e-08 | 0.81 | 0.02 | 0.96 | FALSE |
15 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PSEN1 | 0.07 | 0.03 | blup | 58 | 0.05 | 5.2e-06 | 5.3 | -7.1 | 1.2e-12 | -0.28 | 0.01 | 0.97 | FALSE |
16 | The Cancer Genome Atlas | Stomach Adenocarcinoma | DCAF4 | 0.07 | 0.02 | blup | 84 | 0.04 | 8.9e-04 | 6.4 | 6.6 | 4.2e-11 | 0.79 | 0.01 | 0.93 | FALSE |