Best TWAS P=7.82e-09 · Best GWAS P=4.43e-11 conditioned to 0.00054
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | RP11-479G22.8 | 0.14 | 0.18 | lasso | 4 | 0.18 | 1.1e-14 | 4.7 | -5.1 | 3.1e-07 | -0.43 | 0.24 | 0.75 | FALSE |
2 | GTEx | Adrenal Gland | RP11-479G22.8 | 0.23 | 0.21 | lasso | 11 | 0.19 | 2.8e-07 | 4.7 | -5.2 | 2.1e-07 | -0.47 | 0.19 | 0.79 | FALSE |
3 | GTEx | Artery Aorta | CCDC7 | 0.10 | 0.02 | enet | 11 | 0.05 | 1.1e-03 | 4.9 | 5.2 | 2.6e-07 | 0.67 | 0.67 | 0.06 | FALSE |
4 | GTEx | Artery Tibial | CCDC7 | 0.06 | 0.01 | enet | 31 | 0.03 | 1.5e-03 | 4.7 | 5.6 | 1.8e-08 | 0.59 | 0.55 | 0.28 | FALSE |
5 | GTEx | Brain Caudate basal ganglia | RP11-479G22.8 | 0.11 | 0.06 | lasso | 3 | 0.04 | 2.8e-02 | 5.1 | -5.2 | 1.5e-07 | -0.51 | 0.05 | 0.50 | FALSE |
6 | GTEx | Brain Cerebellum | CCDC7 | 0.30 | 0.08 | enet | 31 | 0.19 | 2.1e-06 | 5.0 | 5.6 | 2.6e-08 | 0.69 | 0.59 | 0.29 | FALSE |
7 | GTEx | Breast Mammary Tissue | RP11-479G22.8 | 0.15 | 0.05 | enet | 23 | 0.14 | 2.0e-07 | 4.6 | -5.5 | 3.2e-08 | -0.54 | 0.10 | 0.89 | FALSE |
8 | GTEx | Pituitary | RP11-479G22.8 | 0.32 | 0.30 | enet | 21 | 0.32 | 1.0e-08 | 4.7 | -5.8 | 8.8e-09 | -0.53 | 0.23 | 0.72 | FALSE |
9 | GTEx | Spleen | RP11-479G22.8 | 0.15 | 0.20 | lasso | 4 | 0.15 | 9.9e-05 | 5.1 | -5.3 | 9.4e-08 | -0.56 | 0.07 | 0.70 | FALSE |
10 | GTEx | Whole Blood | CCDC7 | 0.06 | 0.00 | lasso | 11 | 0.01 | 1.8e-02 | 4.2 | 5.8 | 7.8e-09 | 0.74 | 0.08 | 0.83 | TRUE |