Best TWAS P=2.08e-14 · Best GWAS P=9.23e-11 conditioned to 0.346
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | RAB24 | 0.14 | 0.06 | enet | 14 | 0.09 | 4.2e-11 | -5.4 | -7.3 | 4.0e-13 | 0.12 | 0.56 | 0.44 | TRUE |
2 | GTEx | Adipose Subcutaneous | RP11-1277A3.3 | 0.11 | 0.06 | enet | 19 | 0.07 | 1.3e-06 | 5.0 | -5.4 | 6.8e-08 | 0.64 | 0.15 | 0.75 | FALSE |
3 | GTEx | Artery Tibial | DBN1 | 0.07 | 0.07 | lasso | 2 | 0.05 | 4.5e-05 | 5.1 | -5.8 | 5.9e-09 | 0.77 | 0.05 | 0.94 | TRUE |
4 | GTEx | Muscle Skeletal | PDLIM7 | 0.39 | 0.24 | lasso | 3 | 0.23 | 1.8e-22 | 5.1 | 5.2 | 2.3e-07 | -0.68 | 0.84 | 0.16 | FALSE |
5 | GTEx | Nerve Tibial | DOK3 | 0.17 | 0.10 | enet | 14 | 0.08 | 4.2e-06 | 3.6 | 5.3 | 9.1e-08 | -0.40 | 0.90 | 0.08 | FALSE |
6 | GTEx | Nerve Tibial | RP11-1334A24.6 | 0.19 | 0.00 | enet | 36 | 0.06 | 3.2e-05 | 3.6 | 7.7 | 2.1e-14 | -0.34 | 0.09 | 0.07 | TRUE |
7 | METSIM | Adipose | RAB24 | 0.05 | 0.02 | lasso | 4 | 0.02 | 1.2e-03 | -5.4 | -5.8 | 7.7e-09 | 0.06 | 0.32 | 0.41 | FALSE |
8 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DOK3 | 0.03 | 0.01 | enet | 10 | 0.02 | 4.6e-05 | 2.8 | 6.9 | 6.8e-12 | -0.69 | 0.02 | 0.49 | FALSE |
9 | The Cancer Genome Atlas | Lung Adenocarcinoma | DOK3 | 0.04 | 0.01 | enet | 6 | 0.02 | 2.2e-03 | 2.8 | 5.6 | 1.7e-08 | -0.70 | 0.01 | 0.66 | FALSE |
10 | The Cancer Genome Atlas | Prostate Adenocarcinoma | RAB24 | 0.23 | 0.04 | enet | 19 | 0.06 | 6.5e-07 | -5.4 | -5.3 | 1.3e-07 | 0.00 | 0.00 | 0.97 | FALSE |