Best TWAS P=2.4e-104 · Best GWAS P=5.11e-221 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | EPDR1 | 0.12 | 0.06 | lasso | 5 | 0.05 | 9.4e-05 | 13.738 | 7.1 | 1.5e-12 | -0.05 | 0.94 | 0.00 | TRUE |
2 | GTEx | Adipose Visceral Omentum | EPDR1 | 0.18 | 0.01 | lasso | 4 | 0.01 | 8.9e-02 | 13.738 | 12.0 | 2.4e-33 | 0.02 | 0.17 | 0.10 | FALSE |
3 | GTEx | Artery Aorta | SFRP4 | 0.32 | 0.27 | lasso | 6 | 0.24 | 2.0e-13 | 8.005 | -8.4 | 4.3e-17 | 0.04 | 1.00 | 0.00 | FALSE |
4 | GTEx | Artery Tibial | EPDR1 | 0.27 | 0.15 | lasso | 12 | 0.16 | 3.4e-12 | 13.738 | 11.1 | 7.7e-29 | 0.09 | 1.00 | 0.00 | TRUE |
5 | GTEx | Brain Hippocampus | AMPH | 0.40 | 0.01 | enet | 32 | -0.01 | 4.5e-01 | -0.326 | 8.9 | 7.7e-19 | 0.17 | 0.14 | 0.05 | TRUE |
6 | GTEx | Lung | EPDR1 | 0.15 | 0.06 | enet | 24 | 0.08 | 9.8e-07 | 4.331 | 9.4 | 4.5e-21 | 0.08 | 0.71 | 0.01 | FALSE |
7 | GTEx | Nerve Tibial | EPDR1 | 0.29 | 0.14 | lasso | 4 | 0.23 | 2.7e-16 | 16.276 | 14.3 | 2.8e-46 | 0.10 | 1.00 | 0.00 | FALSE |
8 | GTEx | Pancreas | EPDR1 | 0.18 | 0.15 | lasso | 5 | 0.17 | 1.0e-07 | -19.705 | 18.9 | 1.4e-79 | 0.27 | 0.69 | 0.02 | TRUE |
9 | GTEx | Thyroid | EPDR1 | 0.19 | 0.06 | enet | 25 | 0.10 | 4.0e-08 | 13.738 | 17.6 | 3.0e-69 | 0.24 | 0.65 | 0.23 | FALSE |
10 | METSIM | Adipose | RP11-121A8.1 | 0.06 | 0.09 | lasso | 3 | 0.08 | 3.6e-12 | 5.552 | -5.6 | 2.6e-08 | -0.08 | 1.00 | 0.00 | TRUE |
11 | NTR | Blood | TXNDC3 | 0.03 | 0.00 | bslmm | 614 | 0.01 | 9.3e-05 | 1.203 | 7.0 | 3.4e-12 | 0.26 | 0.10 | 0.08 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | EPDR1 | 0.17 | 0.06 | lasso | 6 | 0.10 | 2.5e-13 | 9.595 | 13.4 | 4.8e-41 | 0.10 | 1.00 | 0.00 | FALSE |
13 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EPDR1 | 0.06 | 0.01 | enet | 22 | 0.06 | 6.7e-12 | 6.288 | 8.3 | 6.7e-17 | -0.05 | 0.95 | 0.00 | FALSE |
14 | The Cancer Genome Atlas | Esophageal Carcinoma | TXNDC3 | 0.48 | -0.01 | blup | 129 | 0.11 | 1.9e-04 | 12.620 | -8.5 | 2.4e-17 | -0.11 | 0.01 | 0.37 | TRUE |
15 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EPDR1 | 0.08 | 0.04 | enet | 3 | 0.05 | 5.4e-06 | 13.738 | 21.7 | 2.4e-104 | 0.34 | 0.33 | 0.62 | TRUE |
16 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TXNDC3 | 0.07 | 0.02 | blup | 129 | 0.03 | 5.1e-04 | -1.809 | -5.8 | 9.0e-09 | 0.04 | 0.06 | 0.20 | FALSE |
17 | The Cancer Genome Atlas | Brain Lower Grade Glioma | EPDR1 | 0.05 | 0.02 | blup | 113 | 0.01 | 1.1e-02 | 9.595 | 6.8 | 9.4e-12 | 0.05 | 0.04 | 0.05 | FALSE |
18 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TXNDC3 | 0.07 | 0.00 | blup | 129 | 0.01 | 1.1e-02 | 1.998 | 5.6 | 1.7e-08 | 0.04 | 0.04 | 0.08 | FALSE |
19 | The Cancer Genome Atlas | Lung Adenocarcinoma | TXNDC3 | 0.04 | 0.00 | blup | 129 | 0.02 | 2.4e-03 | 0.085 | -6.5 | 7.8e-11 | -0.04 | 0.07 | 0.04 | TRUE |
20 | The Cancer Genome Atlas | Prostate Adenocarcinoma | EPDR1 | 0.17 | 0.10 | enet | 15 | 0.13 | 8.0e-14 | -4.594 | -6.5 | 7.6e-11 | -0.01 | 1.00 | 0.00 | TRUE |
21 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | EPDR1 | 0.09 | 0.10 | lasso | 2 | 0.06 | 2.8e-03 | -10.428 | 10.9 | 1.1e-27 | 0.06 | 0.09 | 0.05 | TRUE |