Best TWAS P=2.67e-15 · Best GWAS P=4.06e-12 conditioned to 0.385
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DOCK8 | 0.06 | 0.03 | lasso | 4 | 0.04 | 5.3e-06 | 6.1 | 5.7 | 1.0e-08 | 0.83 | 0.03 | 0.96 | FALSE |
2 | GTEx | Adipose Subcutaneous | CBWD1 | 0.37 | 0.22 | enet | 17 | 0.23 | 5.2e-19 | 6.5 | 6.2 | 5.5e-10 | 0.80 | 0.04 | 0.96 | FALSE |
3 | GTEx | Adipose Visceral Omentum | CBWD1 | 0.26 | 0.06 | enet | 30 | 0.14 | 1.7e-07 | 5.7 | 5.2 | 1.8e-07 | 0.63 | 0.32 | 0.68 | FALSE |
4 | GTEx | Artery Aorta | CBWD1 | 0.26 | 0.09 | enet | 20 | 0.16 | 3.1e-09 | 5.7 | 5.6 | 1.9e-08 | 0.71 | 0.26 | 0.74 | FALSE |
5 | GTEx | Artery Tibial | CBWD1 | 0.33 | 0.21 | enet | 10 | 0.22 | 3.0e-17 | 5.1 | 6.3 | 2.3e-10 | 0.76 | 0.85 | 0.15 | FALSE |
6 | GTEx | Brain Caudate basal ganglia | CBWD1 | 0.23 | 0.11 | lasso | 3 | 0.02 | 7.5e-02 | 6.0 | 6.9 | 5.9e-12 | 0.76 | 0.06 | 0.80 | FALSE |
7 | GTEx | Brain Cortex | DOCK8 | 0.22 | 0.05 | lasso | 5 | 0.04 | 3.2e-02 | 6.2 | 6.5 | 1.1e-10 | 0.74 | 0.07 | 0.60 | FALSE |
8 | GTEx | Brain Cortex | CBWD1 | 0.37 | 0.20 | lasso | 3 | 0.25 | 1.4e-07 | 6.5 | 6.5 | 7.6e-11 | 0.89 | 0.04 | 0.95 | FALSE |
9 | GTEx | Brain Frontal Cortex BA9 | CBWD1 | 0.24 | 0.17 | enet | 16 | 0.17 | 3.0e-05 | 6.5 | 5.9 | 3.5e-09 | 0.83 | 0.03 | 0.84 | FALSE |
10 | GTEx | Brain Hippocampus | CBWD1 | 0.23 | 0.04 | enet | 21 | 0.01 | 1.5e-01 | 5.1 | 6.0 | 2.4e-09 | 0.66 | 0.07 | 0.62 | FALSE |
11 | GTEx | Brain Nucleus accumbens basal ganglia | CBWD1 | 0.34 | 0.18 | lasso | 4 | 0.19 | 7.5e-06 | 6.5 | 6.9 | 6.4e-12 | 0.93 | 0.01 | 0.99 | FALSE |
12 | GTEx | Breast Mammary Tissue | CBWD1 | 0.23 | 0.06 | lasso | 4 | 0.09 | 2.1e-05 | 6.5 | 7.0 | 2.0e-12 | 0.83 | 0.05 | 0.94 | FALSE |
13 | GTEx | Cells EBV-transformed lymphocytes | CBWD1 | 0.29 | 0.17 | lasso | 5 | 0.17 | 3.5e-06 | 6.5 | 6.6 | 3.4e-11 | 0.85 | 0.03 | 0.96 | FALSE |
14 | GTEx | Cells Transformed fibroblasts | CBWD1 | 0.61 | 0.29 | enet | 18 | 0.45 | 4.1e-37 | 6.5 | 6.5 | 7.3e-11 | 0.79 | 0.04 | 0.96 | FALSE |
15 | GTEx | Colon Sigmoid | CBWD1 | 0.23 | 0.06 | enet | 11 | 0.09 | 5.9e-04 | 6.5 | 7.9 | 2.7e-15 | 0.81 | 0.06 | 0.89 | TRUE |
16 | GTEx | Colon Transverse | CBWD1 | 0.44 | 0.32 | enet | 22 | 0.28 | 1.3e-13 | 5.7 | 6.3 | 2.3e-10 | 0.76 | 0.40 | 0.60 | FALSE |
17 | GTEx | Esophagus Gastroesophageal Junction | CBWD1 | 0.15 | 0.11 | enet | 9 | 0.09 | 4.4e-04 | 5.7 | 6.3 | 2.6e-10 | 0.70 | 0.24 | 0.57 | FALSE |
18 | GTEx | Esophagus Mucosa | DOCK8 | 0.08 | 0.04 | lasso | 6 | 0.04 | 1.2e-03 | 6.4 | 6.6 | 4.5e-11 | 0.75 | 0.03 | 0.94 | FALSE |
19 | GTEx | Esophagus Mucosa | CBWD1 | 0.43 | 0.41 | enet | 23 | 0.49 | 6.4e-37 | 5.7 | 6.3 | 2.6e-10 | 0.73 | 0.80 | 0.20 | FALSE |
20 | GTEx | Heart Atrial Appendage | CBWD1 | 0.48 | 0.20 | lasso | 9 | 0.26 | 4.5e-12 | 5.7 | 5.8 | 7.1e-09 | 0.63 | 0.57 | 0.43 | FALSE |
21 | GTEx | Liver | CBWD1 | 0.30 | 0.00 | lasso | 4 | 0.04 | 3.4e-02 | 5.7 | 5.3 | 9.2e-08 | 0.67 | 0.03 | 0.77 | FALSE |
22 | GTEx | Lung | CBWD1 | 0.24 | 0.15 | lasso | 5 | 0.18 | 1.0e-13 | 5.1 | 6.1 | 1.3e-09 | 0.66 | 0.81 | 0.19 | FALSE |
23 | GTEx | Muscle Skeletal | CBWD1 | 0.31 | 0.17 | enet | 8 | 0.23 | 1.7e-22 | 5.2 | 5.5 | 4.5e-08 | 0.55 | 0.91 | 0.09 | FALSE |
24 | GTEx | Nerve Tibial | CBWD1 | 0.35 | 0.24 | lasso | 7 | 0.23 | 1.7e-16 | 6.5 | 6.8 | 9.7e-12 | 0.87 | 0.03 | 0.97 | FALSE |
25 | GTEx | Pancreas | DOCK8 | 0.39 | 0.24 | lasso | 7 | 0.26 | 1.5e-11 | -5.5 | -5.2 | 2.0e-07 | -0.59 | 0.88 | 0.11 | FALSE |
26 | GTEx | Pancreas | CBWD1 | 0.20 | 0.03 | enet | 20 | 0.06 | 2.0e-03 | 6.0 | 6.7 | 2.3e-11 | 0.70 | 0.14 | 0.66 | FALSE |
27 | GTEx | Pituitary | CBWD1 | 0.47 | 0.16 | enet | 8 | 0.18 | 2.8e-05 | 5.8 | 6.2 | 6.1e-10 | 0.82 | 0.08 | 0.89 | FALSE |
28 | GTEx | Skin Not Sun Exposed Suprapubic | CBWD1 | 0.49 | 0.23 | enet | 16 | 0.41 | 6.2e-24 | 5.1 | 6.6 | 3.5e-11 | 0.79 | 0.34 | 0.66 | FALSE |
29 | GTEx | Skin Sun Exposed Lower leg | CBWD1 | 0.43 | 0.21 | enet | 21 | 0.37 | 1.3e-31 | 5.1 | 6.2 | 6.0e-10 | 0.77 | 0.38 | 0.62 | FALSE |
30 | GTEx | Small Intestine Terminal Ileum | CBWD1 | 0.30 | 0.19 | lasso | 2 | 0.22 | 1.2e-05 | 6.0 | 5.9 | 3.0e-09 | 0.66 | 0.11 | 0.57 | FALSE |
31 | GTEx | Spleen | CBWD1 | 0.24 | -0.01 | lasso | 6 | 0.00 | 3.1e-01 | 5.7 | 7.2 | 5.2e-13 | 0.51 | 0.11 | 0.19 | FALSE |
32 | GTEx | Thyroid | DOCK8 | 0.18 | 0.14 | lasso | 8 | 0.16 | 1.9e-12 | 2.1 | 5.2 | 2.3e-07 | 0.60 | 0.79 | 0.21 | FALSE |
33 | GTEx | Thyroid | CBWD1 | 0.38 | 0.24 | lasso | 4 | 0.32 | 1.8e-25 | 6.5 | 6.5 | 8.8e-11 | 0.80 | 0.06 | 0.94 | FALSE |
34 | GTEx | Vagina | CBWD1 | 0.52 | 0.21 | enet | 28 | 0.32 | 3.6e-08 | 5.1 | 5.7 | 9.3e-09 | 0.68 | 0.12 | 0.84 | FALSE |
35 | ROSMAP | Brain Pre-frontal Cortex | CBWD1 | 0.31 | 0.27 | lasso | 7 | 0.26 | 9.2e-34 | 4.0 | 5.2 | 2.3e-07 | 0.68 | 1.00 | 0.00 | FALSE |
36 | The Cancer Genome Atlas | Glioblastoma Multiforme | CBWD1 | 0.14 | 0.06 | blup | 30 | 0.08 | 2.4e-03 | 6.0 | 6.2 | 7.8e-10 | 0.65 | 0.02 | 0.42 | FALSE |
37 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CBWD1 | 0.11 | 0.11 | lasso | 3 | 0.13 | 2.1e-14 | 4.0 | 5.1 | 2.9e-07 | 0.61 | 0.66 | 0.34 | FALSE |
38 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CBWD1 | 0.06 | 0.02 | enet | 17 | 0.05 | 2.2e-06 | 5.1 | 5.9 | 3.8e-09 | 0.72 | 0.02 | 0.97 | FALSE |
39 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CBWD1 | 0.26 | 0.04 | blup | 30 | 0.09 | 1.2e-05 | 6.1 | 6.6 | 3.8e-11 | 0.69 | 0.01 | 0.85 | FALSE |
40 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CBWD1 | 0.15 | 0.11 | lasso | 3 | 0.11 | 1.4e-12 | 4.0 | 5.3 | 9.0e-08 | 0.67 | 0.80 | 0.20 | FALSE |
41 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DOCK8 | 0.12 | 0.10 | enet | 13 | 0.12 | 3.9e-13 | 5.2 | 6.2 | 5.7e-10 | 0.80 | 0.71 | 0.29 | FALSE |
42 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CBWD1 | 0.07 | 0.08 | enet | 4 | 0.09 | 1.8e-10 | 4.0 | 5.5 | 4.0e-08 | 0.72 | 0.88 | 0.12 | FALSE |
43 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DOCK8 | 0.05 | 0.01 | blup | 283 | 0.03 | 8.7e-05 | -2.9 | 6.1 | 1.2e-09 | 0.64 | 0.34 | 0.38 | FALSE |
44 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | C9orf66 | 0.09 | 0.02 | enet | 7 | 0.02 | 1.3e-02 | 5.8 | 5.4 | 6.0e-08 | 0.78 | 0.01 | 0.81 | FALSE |
45 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | CBWD1 | 0.11 | 0.09 | enet | 5 | 0.10 | 5.6e-07 | 6.0 | 6.0 | 2.3e-09 | 0.68 | 0.13 | 0.87 | FALSE |
46 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CBWD1 | 0.10 | 0.10 | blup | 30 | 0.11 | 1.9e-05 | 5.7 | 5.3 | 8.6e-08 | 0.55 | 0.14 | 0.54 | FALSE |
47 | The Cancer Genome Atlas | Rectum Adenocarcinoma | CBWD1 | 0.40 | 0.14 | blup | 30 | 0.26 | 9.9e-07 | 4.0 | 5.9 | 4.6e-09 | 0.62 | 0.04 | 0.78 | FALSE |
48 | The Cancer Genome Atlas | Soft Tissue Sarcoma | CBWD1 | 0.06 | 0.02 | blup | 30 | 0.03 | 8.8e-03 | 5.7 | 6.4 | 1.2e-10 | 0.80 | 0.02 | 0.52 | FALSE |
49 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CBWD1 | 0.26 | 0.17 | blup | 30 | 0.22 | 1.5e-15 | 6.0 | 5.3 | 1.4e-07 | 0.51 | 0.17 | 0.83 | FALSE |
50 | The Cancer Genome Atlas | Thyroid Carcinoma | CBWD1 | 0.20 | 0.16 | blup | 30 | 0.21 | 4.1e-20 | 5.1 | 5.7 | 1.3e-08 | 0.61 | 0.60 | 0.40 | FALSE |
51 | The Cancer Genome Atlas | Thyroid Carcinoma | DOCK8 | 0.10 | 0.05 | lasso | 3 | 0.05 | 2.6e-05 | 6.0 | 5.6 | 2.7e-08 | 0.59 | 0.20 | 0.72 | FALSE |
52 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | CBWD1 | 0.15 | 0.13 | lasso | 2 | 0.10 | 8.8e-04 | 6.5 | 6.5 | 1.1e-10 | 0.85 | 0.00 | 0.84 | FALSE |