Best TWAS P=2.12e-12 · Best GWAS P=3.29e-11 conditioned to 0.463
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | ATXN3 | 0.19 | 0.17 | lasso | 5 | 0.17 | 1.7e-13 | 6.6 | 6.5 | 7.7e-11 | 1.00 | 0.02 | 0.98 | FALSE |
2 | GTEx | Adipose Subcutaneous | RP11-529H20.5 | 0.14 | 0.16 | lasso | 3 | 0.15 | 3.0e-12 | 6.6 | 6.4 | 1.8e-10 | 0.98 | 0.02 | 0.98 | FALSE |
3 | GTEx | Adipose Subcutaneous | RP11-529H20.6 | 0.16 | 0.26 | lasso | 2 | 0.26 | 4.8e-21 | 6.6 | 6.6 | 4.6e-11 | 1.00 | 0.03 | 0.97 | FALSE |
4 | GTEx | Adipose Visceral Omentum | ATXN3 | 0.19 | 0.14 | lasso | 6 | 0.12 | 7.0e-07 | 6.6 | 6.4 | 1.4e-10 | 1.00 | 0.03 | 0.97 | FALSE |
5 | GTEx | Adipose Visceral Omentum | RP11-529H20.5 | 0.19 | 0.05 | lasso | 6 | 0.08 | 9.9e-05 | 6.6 | 5.8 | 4.9e-09 | 0.94 | 0.03 | 0.97 | FALSE |
6 | GTEx | Adipose Visceral Omentum | RP11-529H20.6 | 0.26 | 0.29 | lasso | 4 | 0.28 | 1.1e-14 | 6.5 | 6.6 | 5.0e-11 | 1.00 | 0.03 | 0.97 | FALSE |
7 | GTEx | Adrenal Gland | RP11-529H20.6 | 0.22 | 0.21 | lasso | 7 | 0.18 | 4.8e-07 | 6.5 | 6.8 | 1.0e-11 | 0.99 | 0.03 | 0.97 | FALSE |
8 | GTEx | Artery Aorta | TRIP11 | 0.20 | 0.00 | enet | 8 | 0.02 | 4.0e-02 | 6.6 | 7.0 | 2.1e-12 | 0.90 | 0.04 | 0.82 | TRUE |
9 | GTEx | Artery Aorta | RP11-529H20.6 | 0.20 | 0.14 | lasso | 4 | 0.18 | 6.4e-10 | 6.6 | 5.8 | 8.3e-09 | 0.92 | 0.02 | 0.97 | FALSE |
10 | GTEx | Artery Coronary | ATXN3 | 0.21 | 0.20 | lasso | 2 | 0.24 | 1.4e-08 | 6.6 | 5.6 | 2.6e-08 | 0.87 | 0.03 | 0.97 | FALSE |
11 | GTEx | Artery Coronary | TRIP11 | 0.18 | 0.01 | lasso | 3 | 0.00 | 3.2e-01 | 6.0 | 6.9 | 4.0e-12 | 0.87 | 0.04 | 0.63 | FALSE |
12 | GTEx | Artery Coronary | RP11-529H20.5 | 0.17 | 0.01 | lasso | 4 | 0.04 | 1.6e-02 | -4.2 | 6.1 | 1.3e-09 | 0.71 | 0.05 | 0.73 | FALSE |
13 | GTEx | Artery Tibial | ATXN3 | 0.13 | 0.11 | lasso | 3 | 0.10 | 5.8e-08 | 6.3 | 6.4 | 1.2e-10 | 0.84 | 0.13 | 0.87 | FALSE |
14 | GTEx | Artery Tibial | RP11-529H20.6 | 0.20 | 0.22 | lasso | 8 | 0.22 | 2.3e-17 | 6.6 | 6.6 | 4.6e-11 | 1.00 | 0.02 | 0.98 | FALSE |
15 | GTEx | Breast Mammary Tissue | ATXN3 | 0.20 | 0.24 | lasso | 8 | 0.23 | 3.5e-12 | 6.6 | 6.7 | 2.2e-11 | 1.00 | 0.03 | 0.97 | FALSE |
16 | GTEx | Breast Mammary Tissue | RP11-529H20.5 | 0.22 | 0.10 | enet | 23 | 0.12 | 1.1e-06 | 6.6 | 6.0 | 2.6e-09 | 0.89 | 0.03 | 0.97 | FALSE |
17 | GTEx | Breast Mammary Tissue | RP11-529H20.6 | 0.20 | 0.23 | enet | 13 | 0.27 | 3.5e-14 | 6.6 | 6.7 | 1.7e-11 | 0.99 | 0.03 | 0.97 | FALSE |
18 | GTEx | Breast Mammary Tissue (Female) | ATXN3 | 0.18 | 0.04 | lasso | 4 | 0.03 | 3.3e-02 | 6.3 | 6.6 | 5.2e-11 | 0.89 | 0.04 | 0.92 | FALSE |
19 | GTEx | Breast Mammary Tissue (Female) | RP11-529H20.5 | 0.17 | -0.01 | enet | 35 | -0.01 | 5.8e-01 | 6.6 | 5.4 | 8.4e-08 | 0.73 | 0.04 | 0.61 | FALSE |
20 | GTEx | Breast Mammary Tissue (Female) | RP11-529H20.6 | 0.22 | 0.13 | lasso | 3 | 0.09 | 1.5e-03 | 6.6 | 6.8 | 1.5e-11 | 0.98 | 0.03 | 0.96 | FALSE |
21 | GTEx | Cells EBV-transformed lymphocytes | RP11-529H20.6 | 0.41 | 0.30 | lasso | 2 | 0.28 | 6.9e-10 | 6.6 | 6.2 | 4.5e-10 | 0.99 | 0.02 | 0.98 | FALSE |
22 | GTEx | Cells Transformed fibroblasts | ATXN3 | 0.14 | 0.10 | lasso | 9 | 0.09 | 6.0e-07 | 6.6 | 6.7 | 1.8e-11 | 0.99 | 0.02 | 0.98 | FALSE |
23 | GTEx | Cells Transformed fibroblasts | TRIP11 | 0.09 | 0.04 | lasso | 2 | 0.00 | 3.8e-01 | 6.5 | 6.5 | 8.0e-11 | 0.99 | 0.03 | 0.86 | FALSE |
24 | GTEx | Cells Transformed fibroblasts | RP11-529H20.5 | 0.10 | 0.13 | lasso | 11 | 0.12 | 3.1e-09 | 6.6 | 6.6 | 4.0e-11 | 1.00 | 0.02 | 0.98 | FALSE |
25 | GTEx | Cells Transformed fibroblasts | RP11-529H20.6 | 0.27 | 0.26 | lasso | 6 | 0.24 | 3.1e-18 | 6.6 | 6.6 | 5.2e-11 | 1.00 | 0.02 | 0.98 | FALSE |
26 | GTEx | Colon Sigmoid | ATXN3 | 0.31 | 0.30 | lasso | 2 | 0.33 | 3.4e-12 | 6.6 | 6.7 | 1.7e-11 | 0.95 | 0.02 | 0.98 | FALSE |
27 | GTEx | Colon Sigmoid | TRIP11 | 0.15 | 0.09 | enet | 18 | 0.07 | 1.7e-03 | 4.8 | 5.2 | 1.8e-07 | 0.77 | 0.03 | 0.85 | FALSE |
28 | GTEx | Colon Sigmoid | RP11-529H20.5 | 0.27 | 0.05 | lasso | 8 | 0.04 | 1.9e-02 | 6.0 | 6.7 | 2.7e-11 | 0.82 | 0.04 | 0.91 | FALSE |
29 | GTEx | Colon Sigmoid | RP11-529H20.6 | 0.24 | 0.24 | lasso | 3 | 0.27 | 4.8e-10 | 6.6 | 6.8 | 1.0e-11 | 0.99 | 0.03 | 0.97 | FALSE |
30 | GTEx | Colon Transverse | RP11-529H20.6 | 0.18 | 0.14 | lasso | 5 | 0.18 | 3.7e-09 | 6.6 | 6.4 | 1.2e-10 | 0.96 | 0.02 | 0.98 | FALSE |
31 | GTEx | Esophagus Gastroesophageal Junction | TRIP11 | 0.16 | 0.13 | lasso | 11 | 0.12 | 3.7e-05 | 6.3 | 6.3 | 3.5e-10 | 0.80 | 0.03 | 0.95 | FALSE |
32 | GTEx | Esophagus Gastroesophageal Junction | RP11-529H20.5 | 0.17 | 0.02 | enet | 23 | 0.01 | 9.6e-02 | 6.6 | 5.8 | 5.9e-09 | 0.81 | 0.03 | 0.92 | FALSE |
33 | GTEx | Esophagus Gastroesophageal Junction | RP11-529H20.6 | 0.26 | 0.27 | enet | 26 | 0.26 | 6.2e-10 | 6.6 | 6.2 | 5.6e-10 | 0.97 | 0.02 | 0.98 | FALSE |
34 | GTEx | Esophagus Mucosa | TRIP11 | 0.09 | 0.01 | lasso | 4 | 0.00 | 2.4e-01 | 6.0 | 5.3 | 1.0e-07 | 0.75 | 0.04 | 0.76 | FALSE |
35 | GTEx | Esophagus Mucosa | RP11-529H20.6 | 0.13 | 0.11 | lasso | 10 | 0.13 | 7.9e-09 | 6.6 | 6.3 | 2.2e-10 | 0.96 | 0.03 | 0.97 | FALSE |
36 | GTEx | Esophagus Muscularis | ATXN3 | 0.16 | 0.17 | lasso | 5 | 0.17 | 2.0e-10 | 6.6 | 6.8 | 1.1e-11 | 0.98 | 0.02 | 0.98 | FALSE |
37 | GTEx | Esophagus Muscularis | TRIP11 | 0.10 | 0.11 | lasso | 4 | 0.10 | 8.3e-07 | 6.6 | 6.8 | 1.2e-11 | 0.99 | 0.02 | 0.98 | FALSE |
38 | GTEx | Esophagus Muscularis | RP11-529H20.5 | 0.17 | 0.11 | enet | 19 | 0.11 | 2.9e-07 | 6.6 | 6.7 | 2.3e-11 | 0.90 | 0.03 | 0.97 | FALSE |
39 | GTEx | Esophagus Muscularis | RP11-529H20.6 | 0.21 | 0.24 | lasso | 2 | 0.22 | 9.2e-14 | 6.6 | 6.6 | 3.6e-11 | 1.00 | 0.02 | 0.98 | FALSE |
40 | GTEx | Heart Atrial Appendage | RP11-529H20.6 | 0.27 | 0.20 | lasso | 5 | 0.18 | 2.5e-08 | 6.6 | 6.7 | 1.6e-11 | 1.00 | 0.03 | 0.97 | FALSE |
41 | GTEx | Heart Left Ventricle | RP11-529H20.6 | 0.13 | 0.12 | enet | 14 | 0.12 | 3.4e-07 | 6.6 | 5.9 | 3.3e-09 | 0.89 | 0.03 | 0.97 | FALSE |
42 | GTEx | Lung | RP11-529H20.6 | 0.08 | 0.05 | enet | 15 | 0.05 | 1.8e-04 | 6.6 | 6.4 | 1.4e-10 | 0.92 | 0.03 | 0.97 | FALSE |
43 | GTEx | Muscle Skeletal | ATXN3 | 0.04 | 0.04 | lasso | 5 | 0.04 | 1.2e-04 | 6.6 | 6.7 | 1.9e-11 | 0.99 | 0.03 | 0.96 | FALSE |
44 | GTEx | Muscle Skeletal | TRIP11 | 0.05 | 0.04 | lasso | 6 | 0.03 | 7.9e-04 | 6.6 | 6.8 | 1.2e-11 | 0.98 | 0.03 | 0.95 | FALSE |
45 | GTEx | Muscle Skeletal | RP11-529H20.6 | 0.11 | 0.06 | lasso | 2 | 0.06 | 2.9e-06 | 6.6 | 6.5 | 6.1e-11 | 0.99 | 0.03 | 0.97 | FALSE |
46 | GTEx | Nerve Tibial | ATXN3 | 0.30 | 0.29 | lasso | 4 | 0.29 | 1.6e-20 | 6.6 | 6.5 | 7.4e-11 | 0.99 | 0.02 | 0.98 | FALSE |
47 | GTEx | Nerve Tibial | TRIP11 | 0.21 | 0.14 | lasso | 6 | 0.11 | 3.7e-08 | 6.6 | 6.7 | 2.8e-11 | 1.00 | 0.02 | 0.98 | FALSE |
48 | GTEx | Nerve Tibial | RP11-529H20.5 | 0.28 | 0.26 | lasso | 5 | 0.25 | 9.2e-18 | 6.6 | 6.6 | 3.4e-11 | 1.00 | 0.02 | 0.98 | FALSE |
49 | GTEx | Nerve Tibial | RP11-529H20.6 | 0.29 | 0.30 | lasso | 4 | 0.29 | 4.4e-21 | 6.6 | 6.6 | 3.9e-11 | 1.00 | 0.02 | 0.98 | FALSE |
50 | GTEx | Ovary | ATXN3 | 0.32 | 0.18 | lasso | 8 | 0.18 | 2.9e-05 | 6.6 | 6.4 | 1.5e-10 | 0.97 | 0.03 | 0.94 | FALSE |
51 | GTEx | Ovary | RP11-529H20.5 | 0.24 | 0.10 | lasso | 5 | 0.11 | 1.2e-03 | 6.6 | 6.4 | 1.6e-10 | 0.96 | 0.03 | 0.88 | FALSE |
52 | GTEx | Ovary | RP11-529H20.6 | 0.20 | 0.23 | lasso | 4 | 0.18 | 4.3e-05 | 6.6 | 6.5 | 7.6e-11 | 1.00 | 0.03 | 0.92 | FALSE |
53 | GTEx | Pituitary | ATXN3 | 0.33 | 0.03 | lasso | 2 | 0.03 | 4.7e-02 | 6.6 | 6.4 | 1.2e-10 | 0.98 | 0.03 | 0.90 | FALSE |
54 | GTEx | Pituitary | RP11-529H20.5 | 0.37 | 0.14 | enet | 7 | 0.07 | 6.3e-03 | 3.9 | 5.3 | 1.1e-07 | 0.88 | 0.05 | 0.80 | FALSE |
55 | GTEx | Prostate | ATXN3 | 0.30 | 0.04 | lasso | 5 | 0.06 | 1.4e-02 | 6.6 | 5.5 | 3.8e-08 | 0.78 | 0.04 | 0.61 | FALSE |
56 | GTEx | Prostate | RP11-529H20.6 | 0.28 | 0.00 | lasso | 5 | 0.05 | 2.5e-02 | 6.6 | 6.4 | 1.4e-10 | 0.82 | 0.03 | 0.81 | FALSE |
57 | GTEx | Small Intestine Terminal Ileum | RP11-529H20.6 | 0.36 | 0.32 | lasso | 8 | 0.26 | 1.8e-06 | 6.5 | 6.7 | 2.9e-11 | 1.00 | 0.03 | 0.97 | FALSE |
58 | GTEx | Spleen | ATXN3 | 0.27 | 0.03 | lasso | 3 | 0.01 | 1.5e-01 | 6.6 | 6.1 | 1.4e-09 | 0.94 | 0.03 | 0.81 | FALSE |
59 | GTEx | Spleen | RP11-529H20.6 | 0.53 | 0.22 | enet | 40 | 0.32 | 6.2e-09 | 6.6 | 5.8 | 6.1e-09 | 0.85 | 0.02 | 0.98 | FALSE |
60 | GTEx | Stomach | ATXN3 | 0.24 | 0.09 | lasso | 3 | 0.11 | 5.0e-06 | 6.6 | 6.7 | 2.0e-11 | 0.98 | 0.03 | 0.97 | FALSE |
61 | GTEx | Stomach | RP11-529H20.6 | 0.20 | 0.27 | lasso | 4 | 0.25 | 2.5e-12 | 6.6 | 6.5 | 5.6e-11 | 1.00 | 0.02 | 0.98 | FALSE |
62 | GTEx | Testis | TRIP11 | 0.10 | 0.05 | lasso | 4 | 0.02 | 3.5e-02 | 6.5 | 6.5 | 9.6e-11 | 1.00 | 0.04 | 0.90 | FALSE |
63 | GTEx | Testis | RP11-529H20.5 | 0.19 | 0.05 | lasso | 10 | 0.05 | 4.2e-03 | 6.6 | 6.4 | 1.8e-10 | 0.96 | 0.03 | 0.96 | FALSE |
64 | GTEx | Testis | RP11-529H20.6 | 0.23 | 0.23 | lasso | 3 | 0.22 | 4.9e-10 | 6.6 | 6.7 | 2.8e-11 | 0.99 | 0.02 | 0.98 | FALSE |
65 | GTEx | Thyroid | TRIP11 | 0.08 | 0.04 | lasso | 4 | 0.02 | 6.3e-03 | 6.5 | 6.4 | 1.2e-10 | 0.97 | 0.03 | 0.95 | FALSE |
66 | GTEx | Thyroid | RP11-529H20.6 | 0.17 | 0.18 | lasso | 2 | 0.17 | 9.6e-13 | 6.6 | 6.4 | 1.4e-10 | 1.00 | 0.03 | 0.97 | FALSE |
67 | GTEx | Whole Blood | RP11-529H20.6 | 0.15 | 0.13 | lasso | 4 | 0.16 | 3.8e-14 | 6.6 | 5.8 | 5.1e-09 | 0.96 | 0.03 | 0.97 | FALSE |
68 | YFS | Blood | ATXN3 | 0.20 | 0.14 | enet | 52 | 0.24 | 1.1e-75 | 6.6 | 5.2 | 2.3e-07 | 0.80 | 0.02 | 0.98 | FALSE |
69 | YFS | Blood | FBLN5 | 0.79 | 0.51 | enet | 134 | 0.68 | 1.1e-315 | -5.0 | 5.4 | 7.1e-08 | 0.35 | 1.00 | 0.00 | FALSE |
70 | YFS | Blood | TRIP11 | 0.06 | 0.04 | blup | 510 | 0.04 | 4.4e-14 | 6.3 | 6.4 | 1.4e-10 | 0.85 | 0.09 | 0.91 | FALSE |
71 | The Cancer Genome Atlas | Colon Adenocarcinoma | TRIP11 | 0.04 | 0.01 | blup | 70 | 0.01 | 4.4e-02 | -4.2 | 6.4 | 1.5e-10 | 0.91 | 0.03 | 0.54 | FALSE |
72 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TRIP11 | 0.02 | 0.02 | lasso | 1 | 0.01 | 1.1e-02 | 6.6 | 6.6 | 4.7e-11 | 1.00 | 0.02 | 0.87 | FALSE |
73 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TRIP11 | 0.04 | 0.01 | blup | 71 | 0.02 | 1.4e-03 | -2.3 | 6.5 | 1.1e-10 | 0.86 | 0.02 | 0.73 | FALSE |
74 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | TRIP11 | 0.16 | 0.16 | lasso | 12 | 0.15 | 4.4e-06 | 6.3 | 5.9 | 4.6e-09 | 0.82 | 0.03 | 0.96 | FALSE |
75 | The Cancer Genome Atlas | Thyroid Carcinoma | TRIP11 | 0.08 | 0.04 | blup | 70 | 0.06 | 3.6e-06 | 5.9 | 6.4 | 1.3e-10 | 0.77 | 0.11 | 0.88 | FALSE |
76 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | TRIP11 | 0.14 | 0.04 | blup | 70 | 0.09 | 1.6e-03 | 4.5 | 6.3 | 3.2e-10 | 0.90 | 0.03 | 0.64 | FALSE |