Best TWAS P=3.8e-17 · Best GWAS P=1.53e-23 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CAPZB | 0.13 | 0.16 | lasso | 4 | 0.16 | 1.8e-19 | -7.6 | 7.0 | 2.0e-12 | -0.84 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Visceral Omentum | AKR7A2 | 0.30 | 0.07 | lasso | 8 | 0.07 | 1.3e-04 | -5.0 | -5.9 | 2.8e-09 | 0.55 | 0.33 | 0.51 | TRUE |
3 | GTEx | Artery Aorta | CAPZB | 0.14 | 0.10 | lasso | 6 | 0.10 | 5.0e-06 | -7.6 | 7.7 | 1.4e-14 | -0.90 | 0.03 | 0.97 | FALSE |
4 | GTEx | Artery Coronary | CAPZB | 0.25 | 0.02 | enet | 22 | 0.03 | 3.3e-02 | -8.8 | 5.7 | 1.0e-08 | -0.65 | 0.06 | 0.37 | TRUE |
5 | GTEx | Artery Tibial | CAPZB | 0.09 | 0.07 | lasso | 4 | 0.06 | 8.1e-06 | -9.4 | 7.3 | 2.4e-13 | -0.93 | 0.24 | 0.68 | TRUE |
6 | GTEx | Liver | CAPZB | 0.32 | 0.06 | lasso | 7 | 0.13 | 1.6e-04 | -8.8 | 5.8 | 6.7e-09 | -0.62 | 0.05 | 0.52 | FALSE |
7 | GTEx | Lung | CAPZB | 0.12 | 0.00 | enet | 15 | 0.03 | 4.4e-03 | 9.4 | 7.7 | 1.6e-14 | -0.57 | 0.04 | 0.88 | TRUE |
8 | GTEx | Nerve Tibial | CAPZB | 0.07 | 0.03 | enet | 14 | 0.01 | 3.5e-02 | -8.0 | 8.4 | 3.8e-17 | -0.91 | 0.03 | 0.95 | TRUE |
9 | GTEx | Skin Not Sun Exposed Suprapubic | AKR7A2 | 0.20 | 0.00 | lasso | 5 | 0.04 | 2.4e-03 | -8.3 | -5.3 | 9.0e-08 | 0.53 | 0.04 | 0.77 | FALSE |
10 | GTEx | Spleen | CAPZB | 0.29 | 0.02 | lasso | 9 | 0.09 | 2.0e-03 | -5.6 | 8.1 | 5.7e-16 | -0.51 | 0.06 | 0.45 | TRUE |
11 | GTEx | Testis | CAPZB | 0.28 | 0.09 | enet | 18 | 0.09 | 7.8e-05 | 9.4 | 7.5 | 6.4e-14 | -0.56 | 0.06 | 0.90 | TRUE |
12 | GTEx | Thyroid | CAPZB | 0.22 | 0.06 | lasso | 8 | 0.15 | 1.1e-11 | -6.8 | 8.0 | 9.2e-16 | -0.78 | 0.45 | 0.55 | TRUE |
13 | ROSMAP | Brain Pre-frontal Cortex | CAPZB | 0.28 | 0.39 | lasso | 4 | 0.38 | 9.4e-52 | -7.8 | 7.9 | 2.6e-15 | -0.87 | 1.00 | 0.00 | TRUE |
14 | YFS | Blood | CAPZB | 0.06 | 0.10 | bslmm | 534 | 0.09 | 5.1e-29 | -7.8 | 7.4 | 1.1e-13 | -0.85 | 0.92 | 0.08 | FALSE |
15 | The Cancer Genome Atlas | Thyroid Carcinoma | CAPZB | 0.08 | 0.06 | blup | 160 | 0.07 | 1.2e-07 | -9.4 | 7.8 | 7.0e-15 | -0.88 | 0.03 | 0.97 | FALSE |