Best TWAS P=2.36e-11 · Best GWAS P=4.15e-13 conditioned to 0.000384
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | CYBRD1 | 0.35 | 0.19 | lasso | 6 | 0.24 | 7.3e-20 | 6.7 | -6.5 | 6.6e-11 | -0.77 | 0.00 | 1.00 | FALSE |
2 | GTEx | Adipose Visceral Omentum | CYBRD1 | 0.33 | 0.10 | lasso | 10 | 0.26 | 4.6e-14 | 3.7 | -6.6 | 3.9e-11 | -0.71 | 0.03 | 0.97 | FALSE |
3 | GTEx | Artery Tibial | CYBRD1 | 0.37 | 0.08 | lasso | 9 | 0.21 | 3.0e-16 | 4.7 | -5.8 | 5.7e-09 | -0.75 | 0.00 | 1.00 | FALSE |
4 | GTEx | Breast Mammary Tissue | CYBRD1 | 0.32 | 0.21 | enet | 16 | 0.27 | 2.0e-14 | 6.7 | -5.9 | 4.4e-09 | -0.74 | 0.00 | 1.00 | FALSE |
5 | GTEx | Breast Mammary Tissue (Male) | CYBRD1 | 0.35 | 0.24 | lasso | 6 | 0.20 | 2.4e-05 | 6.7 | -6.0 | 2.0e-09 | -0.72 | 0.00 | 0.98 | FALSE |
6 | GTEx | Breast Mammary Tissue (Female) | CYBRD1 | 0.20 | 0.07 | lasso | 2 | 0.14 | 4.5e-05 | 6.7 | -6.5 | 9.1e-11 | -0.78 | 0.00 | 0.98 | FALSE |
7 | GTEx | Esophagus Muscularis | CYBRD1 | 0.33 | 0.07 | lasso | 9 | 0.22 | 1.3e-13 | 4.7 | -5.7 | 1.0e-08 | -0.75 | 0.06 | 0.94 | FALSE |
8 | GTEx | Muscle Skeletal | CYBRD1 | 0.10 | 0.00 | enet | 9 | 0.01 | 1.5e-02 | 6.7 | -6.7 | 2.4e-11 | -0.71 | 0.00 | 0.99 | TRUE |
9 | GTEx | Nerve Tibial | CYBRD1 | 0.36 | 0.07 | lasso | 10 | 0.20 | 2.3e-14 | 6.7 | -6.0 | 2.1e-09 | -0.73 | 0.00 | 1.00 | FALSE |
10 | GTEx | Thyroid | CYBRD1 | 0.26 | 0.08 | enet | 26 | 0.12 | 1.4e-09 | 6.7 | -5.9 | 3.1e-09 | -0.72 | 0.00 | 1.00 | FALSE |
11 | METSIM | Adipose | CYBRD1 | 0.08 | 0.06 | lasso | 6 | 0.06 | 8.0e-09 | -4.0 | -5.5 | 3.7e-08 | -0.48 | 0.92 | 0.07 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | CYBRD1 | 0.37 | 0.16 | lasso | 9 | 0.30 | 3.0e-39 | 5.1 | -5.9 | 3.4e-09 | -0.77 | 0.31 | 0.69 | FALSE |
13 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | CYBRD1 | 0.14 | 0.04 | enet | 12 | 0.09 | 2.2e-05 | 7.3 | 5.2 | 2.0e-07 | 0.78 | 0.00 | 0.96 | FALSE |
14 | The Cancer Genome Atlas | Thyroid Carcinoma | CYBRD1 | 0.10 | 0.06 | lasso | 4 | 0.06 | 6.2e-07 | 6.7 | -6.6 | 3.3e-11 | -0.86 | 0.00 | 1.00 | FALSE |