Best TWAS P=4.26e-18 · Best GWAS P=6.69e-31 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | WDSUB1 | 0.33 | 0.42 | lasso | 5 | 0.41 | 1.6e-53 | -6.6 | 6.6 | 3.4e-11 | 0.36 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | WDSUB1 | 0.29 | 0.25 | lasso | 7 | 0.25 | 2.5e-20 | -6.6 | 7.0 | 2.8e-12 | 0.40 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adipose Visceral Omentum | WDSUB1 | 0.33 | 0.26 | lasso | 5 | 0.29 | 1.9e-15 | -6.3 | 6.8 | 1.1e-11 | 0.40 | 1.00 | 0.00 | FALSE |
4 | GTEx | Adrenal Gland | WDSUB1 | 0.21 | 0.26 | lasso | 5 | 0.23 | 1.0e-08 | -7.0 | 7.2 | 6.2e-13 | 0.45 | 0.98 | 0.02 | FALSE |
5 | GTEx | Artery Aorta | WDSUB1 | 0.31 | 0.14 | lasso | 10 | 0.25 | 8.5e-14 | -6.6 | 8.7 | 4.3e-18 | 0.47 | 1.00 | 0.00 | TRUE |
6 | GTEx | Artery Coronary | WDSUB1 | 0.45 | 0.21 | enet | 24 | 0.13 | 3.5e-05 | -6.6 | 5.3 | 1.0e-07 | 0.35 | 0.64 | 0.12 | FALSE |
7 | GTEx | Artery Tibial | WDSUB1 | 0.22 | 0.20 | enet | 14 | 0.19 | 1.4e-14 | -6.6 | 6.5 | 7.1e-11 | 0.40 | 1.00 | 0.00 | FALSE |
8 | GTEx | Brain Caudate basal ganglia | WDSUB1 | 0.25 | 0.10 | enet | 22 | 0.11 | 5.1e-04 | -7.0 | 5.7 | 1.2e-08 | 0.42 | 0.24 | 0.05 | TRUE |
9 | GTEx | Brain Cerebellar Hemisphere | WDSUB1 | 0.29 | 0.19 | lasso | 3 | 0.16 | 5.1e-05 | -7.0 | 7.2 | 6.6e-13 | 0.40 | 0.46 | 0.03 | FALSE |
10 | GTEx | Brain Cerebellum | TANC1 | 0.52 | 0.23 | lasso | 7 | 0.24 | 1.2e-07 | -5.4 | -5.6 | 1.9e-08 | -0.47 | 0.40 | 0.06 | TRUE |
11 | GTEx | Brain Cortex | WDSUB1 | 0.20 | 0.22 | lasso | 3 | 0.22 | 1.2e-06 | -6.7 | 7.2 | 8.8e-13 | 0.45 | 0.64 | 0.05 | FALSE |
12 | GTEx | Brain Hypothalamus | WDSUB1 | 0.21 | 0.02 | enet | 24 | 0.06 | 1.8e-02 | -6.6 | 8.3 | 8.2e-17 | 0.48 | 0.13 | 0.16 | FALSE |
13 | GTEx | Brain Nucleus accumbens basal ganglia | WDSUB1 | 0.36 | 0.22 | lasso | 10 | 0.20 | 3.7e-06 | -6.8 | 7.7 | 1.2e-14 | 0.50 | 0.45 | 0.04 | FALSE |
14 | GTEx | Breast Mammary Tissue | WDSUB1 | 0.19 | 0.07 | lasso | 5 | 0.10 | 9.7e-06 | -6.8 | 5.8 | 9.0e-09 | 0.36 | 0.71 | 0.03 | FALSE |
15 | GTEx | Cells Transformed fibroblasts | WDSUB1 | 0.38 | 0.41 | lasso | 11 | 0.46 | 1.5e-38 | -6.8 | 7.1 | 9.6e-13 | 0.40 | 1.00 | 0.00 | FALSE |
16 | GTEx | Colon Sigmoid | WDSUB1 | 0.25 | 0.18 | enet | 13 | 0.21 | 4.5e-08 | -6.7 | 7.2 | 7.6e-13 | 0.45 | 0.99 | 0.00 | TRUE |
17 | GTEx | Colon Transverse | WDSUB1 | 0.14 | 0.12 | lasso | 4 | 0.10 | 1.7e-05 | -6.6 | 6.9 | 4.4e-12 | 0.38 | 0.85 | 0.01 | FALSE |
18 | GTEx | Esophagus Gastroesophageal Junction | WDSUB1 | 0.59 | 0.20 | lasso | 19 | 0.24 | 3.6e-09 | -6.8 | 6.4 | 1.3e-10 | 0.43 | 0.98 | 0.01 | TRUE |
19 | GTEx | Esophagus Muscularis | WDSUB1 | 0.45 | 0.29 | lasso | 6 | 0.34 | 4.1e-21 | -6.8 | 6.1 | 9.7e-10 | 0.34 | 1.00 | 0.00 | TRUE |
20 | GTEx | Heart Atrial Appendage | WDSUB1 | 0.24 | 0.13 | lasso | 3 | 0.19 | 6.2e-09 | -6.3 | 6.9 | 5.1e-12 | 0.41 | 0.99 | 0.00 | FALSE |
21 | GTEx | Heart Left Ventricle | WDSUB1 | 0.29 | 0.08 | lasso | 11 | 0.07 | 1.1e-04 | -6.6 | 6.6 | 3.4e-11 | 0.38 | 0.91 | 0.01 | FALSE |
22 | GTEx | Lung | WDSUB1 | 0.09 | 0.10 | lasso | 1 | 0.07 | 5.0e-06 | -6.6 | 6.6 | 4.2e-11 | 0.36 | 0.91 | 0.00 | FALSE |
23 | GTEx | Muscle Skeletal | WDSUB1 | 0.32 | 0.27 | enet | 41 | 0.28 | 5.7e-28 | -6.6 | 7.8 | 9.4e-15 | 0.41 | 1.00 | 0.00 | TRUE |
24 | GTEx | Nerve Tibial | WDSUB1 | 0.42 | 0.27 | lasso | 7 | 0.34 | 6.2e-25 | -6.6 | 6.0 | 1.7e-09 | 0.35 | 1.00 | 0.00 | FALSE |
25 | GTEx | Ovary | WDSUB1 | 0.40 | 0.19 | lasso | 4 | 0.26 | 4.2e-07 | -6.6 | 6.7 | 1.6e-11 | 0.40 | 0.70 | 0.03 | TRUE |
26 | GTEx | Pancreas | WDSUB1 | 0.38 | 0.21 | enet | 58 | 0.20 | 8.5e-09 | -6.6 | 6.7 | 2.1e-11 | 0.30 | 0.99 | 0.00 | FALSE |
27 | GTEx | Prostate | WDSUB1 | 0.62 | 0.18 | lasso | 9 | 0.34 | 2.6e-09 | -6.6 | 7.6 | 3.1e-14 | 0.39 | 0.53 | 0.07 | TRUE |
28 | GTEx | Skin Sun Exposed Lower leg | WDSUB1 | 0.08 | 0.08 | enet | 9 | 0.07 | 1.4e-06 | -6.8 | 6.7 | 1.9e-11 | 0.37 | 0.98 | 0.00 | FALSE |
29 | GTEx | Testis | WDSUB1 | 0.52 | 0.43 | lasso | 5 | 0.42 | 1.8e-20 | -6.6 | 6.9 | 6.6e-12 | 0.38 | 1.00 | 0.00 | FALSE |
30 | GTEx | Thyroid | WDSUB1 | 0.19 | 0.10 | lasso | 9 | 0.10 | 2.8e-08 | -6.8 | 7.3 | 3.3e-13 | 0.42 | 1.00 | 0.00 | FALSE |
31 | GTEx | Vagina | WDSUB1 | 0.28 | 0.13 | enet | 4 | 0.14 | 3.8e-04 | -6.8 | 6.9 | 4.4e-12 | 0.39 | 0.16 | 0.10 | FALSE |
32 | GTEx | Whole Blood | WDSUB1 | 0.09 | 0.00 | enet | 4 | 0.00 | 1.1e-01 | -6.7 | 6.0 | 1.5e-09 | 0.25 | 0.12 | 0.03 | FALSE |
33 | METSIM | Adipose | WDSUB1 | 0.14 | 0.08 | enet | 19 | 0.12 | 2.3e-17 | -6.6 | 8.1 | 7.5e-16 | 0.47 | 1.00 | 0.00 | FALSE |
34 | YFS | Blood | WDSUB1 | 0.19 | 0.12 | enet | 54 | 0.16 | 7.3e-51 | -6.6 | 6.0 | 2.5e-09 | 0.24 | 1.00 | 0.00 | FALSE |
35 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | WDSUB1 | 0.15 | 0.14 | lasso | 1 | 0.13 | 1.9e-11 | -6.7 | 6.7 | 2.6e-11 | 0.45 | 1.00 | 0.00 | FALSE |
36 | The Cancer Genome Atlas | Breast Invasive Carcinoma | WDSUB1 | 0.10 | 0.10 | blup | 91 | 0.12 | 7.0e-23 | -6.8 | 6.7 | 2.1e-11 | 0.36 | 1.00 | 0.00 | FALSE |
37 | The Cancer Genome Atlas | Colon Adenocarcinoma | WDSUB1 | 0.10 | 0.04 | enet | 11 | 0.06 | 2.9e-04 | -6.8 | 6.5 | 7.0e-11 | 0.43 | 0.77 | 0.04 | FALSE |
38 | The Cancer Genome Atlas | Glioblastoma Multiforme | WDSUB1 | 0.26 | 0.40 | lasso | 1 | 0.38 | 1.2e-12 | -7.0 | 7.0 | 2.1e-12 | 0.37 | 1.00 | 0.00 | FALSE |
39 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | WDSUB1 | 0.11 | 0.13 | lasso | 6 | 0.15 | 7.0e-17 | -6.6 | 7.1 | 1.4e-12 | 0.42 | 1.00 | 0.00 | FALSE |
40 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | WDSUB1 | 0.17 | 0.15 | lasso | 5 | 0.20 | 1.8e-21 | -7.0 | 7.3 | 3.8e-13 | 0.43 | 1.00 | 0.00 | FALSE |
41 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | WDSUB1 | 0.05 | 0.02 | blup | 80 | 0.03 | 1.1e-02 | -2.8 | 6.7 | 2.5e-11 | 0.46 | 0.11 | 0.04 | FALSE |
42 | The Cancer Genome Atlas | Brain Lower Grade Glioma | WDSUB1 | 0.38 | 0.39 | enet | 15 | 0.40 | 2.5e-48 | -6.6 | 6.0 | 2.0e-09 | 0.32 | 1.00 | 0.00 | FALSE |
43 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | WDSUB1 | 0.08 | 0.02 | blup | 91 | 0.04 | 7.5e-03 | -5.5 | 6.3 | 2.6e-10 | 0.43 | 0.15 | 0.03 | FALSE |
44 | The Cancer Genome Atlas | Lung Adenocarcinoma | WDSUB1 | 0.06 | 0.07 | blup | 92 | 0.06 | 2.6e-07 | -6.7 | 7.4 | 1.2e-13 | 0.36 | 1.00 | 0.00 | TRUE |
45 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | WDSUB1 | 0.10 | 0.11 | enet | 16 | 0.14 | 7.4e-16 | -6.6 | 7.4 | 1.0e-13 | 0.43 | 1.00 | 0.00 | FALSE |
46 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | WDSUB1 | 0.20 | 0.06 | enet | 20 | 0.07 | 7.4e-04 | -7.0 | 8.1 | 6.3e-16 | 0.35 | 0.19 | 0.04 | FALSE |
47 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | WDSUB1 | 0.20 | 0.24 | lasso | 7 | 0.23 | 1.1e-09 | -6.8 | 7.1 | 1.7e-12 | 0.41 | 1.00 | 0.00 | FALSE |
48 | The Cancer Genome Atlas | Prostate Adenocarcinoma | WDSUB1 | 0.17 | 0.22 | lasso | 7 | 0.22 | 8.0e-23 | -6.6 | 7.6 | 2.9e-14 | 0.42 | 1.00 | 0.00 | FALSE |
49 | The Cancer Genome Atlas | Soft Tissue Sarcoma | WDSUB1 | 0.08 | 0.06 | blup | 89 | 0.05 | 5.6e-04 | -6.6 | 8.2 | 2.4e-16 | 0.43 | 0.40 | 0.05 | FALSE |
50 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | WDSUB1 | 0.27 | 0.14 | enet | 14 | 0.14 | 1.6e-05 | -7.0 | 6.8 | 1.5e-11 | 0.44 | 0.80 | 0.02 | FALSE |
51 | The Cancer Genome Atlas | Thyroid Carcinoma | TANC1 | 0.08 | 0.04 | blup | 180 | 0.04 | 1.9e-04 | -5.5 | -6.3 | 3.3e-10 | -0.43 | 0.73 | 0.02 | TRUE |
52 | The Cancer Genome Atlas | Thyroid Carcinoma | WDSUB1 | 0.12 | 0.12 | blup | 89 | 0.12 | 4.6e-12 | -6.7 | 8.3 | 8.8e-17 | 0.40 | 1.00 | 0.00 | FALSE |