Best TWAS P=2.17e-10 · Best GWAS P=3.1e-10 conditioned to 0.0792
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ZXDC | 0.08 | 0.04 | lasso | 4 | 0.05 | 3.2e-07 | 4.4 | -5.7 | 1.4e-08 | 0.78 | 0.15 | 0.84 | FALSE |
2 | GTEx | Adipose Subcutaneous | ZXDC | 0.13 | 0.06 | enet | 6 | 0.05 | 6.4e-05 | -5.9 | 5.5 | 4.4e-08 | -0.83 | 0.03 | 0.96 | FALSE |
3 | GTEx | Artery Tibial | ZXDC | 0.16 | 0.14 | lasso | 5 | 0.14 | 3.0e-11 | -6.0 | 6.0 | 2.4e-09 | -0.86 | 0.02 | 0.98 | FALSE |
4 | GTEx | Brain Cerebellum | ZXDC | 0.24 | 0.16 | lasso | 4 | 0.13 | 1.0e-04 | -5.9 | 6.1 | 1.2e-09 | -0.87 | 0.02 | 0.95 | FALSE |
5 | GTEx | Brain Frontal Cortex BA9 | ZXDC | 0.37 | 0.08 | enet | 20 | 0.18 | 1.3e-05 | 3.9 | 5.8 | 7.7e-09 | -0.75 | 0.03 | 0.91 | FALSE |
6 | GTEx | Breast Mammary Tissue | ZXDC | 0.19 | 0.16 | lasso | 6 | 0.16 | 1.6e-08 | -5.9 | 6.1 | 1.3e-09 | -0.86 | 0.02 | 0.98 | FALSE |
7 | GTEx | Breast Mammary Tissue (Male) | ZXDC | 0.04 | 0.01 | lasso | 8 | 0.01 | 1.4e-01 | -5.9 | 6.3 | 3.5e-10 | -0.92 | 0.03 | 0.52 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | ZXDC | 0.19 | 0.06 | lasso | 7 | 0.09 | 4.0e-07 | -4.8 | 6.0 | 2.7e-09 | -0.86 | 0.05 | 0.95 | FALSE |
9 | GTEx | Colon Sigmoid | ZXDC | 0.34 | 0.17 | enet | 17 | 0.16 | 3.7e-06 | -4.6 | 5.3 | 1.0e-07 | -0.80 | 0.02 | 0.98 | FALSE |
10 | GTEx | Colon Transverse | ZXDC | 0.24 | 0.18 | lasso | 2 | 0.19 | 2.5e-09 | -6.0 | 6.1 | 1.1e-09 | -0.84 | 0.02 | 0.98 | FALSE |
11 | GTEx | Esophagus Mucosa | ZXDC | 0.20 | 0.17 | lasso | 6 | 0.19 | 1.0e-12 | -6.0 | 6.3 | 3.0e-10 | -0.85 | 0.02 | 0.98 | FALSE |
12 | GTEx | Esophagus Muscularis | ZXDC | 0.22 | 0.16 | enet | 25 | 0.17 | 1.6e-10 | -6.0 | 5.2 | 1.6e-07 | -0.81 | 0.02 | 0.98 | FALSE |
13 | GTEx | Heart Atrial Appendage | ZXDC | 0.18 | 0.04 | lasso | 5 | 0.01 | 7.2e-02 | -6.1 | 6.0 | 1.5e-09 | -0.83 | 0.02 | 0.93 | FALSE |
14 | GTEx | Nerve Tibial | ZXDC | 0.26 | 0.21 | lasso | 4 | 0.23 | 2.7e-16 | -5.9 | 6.0 | 2.0e-09 | -0.85 | 0.02 | 0.98 | FALSE |
15 | GTEx | Pituitary | ZXDC | 0.17 | 0.19 | lasso | 2 | 0.16 | 9.2e-05 | -5.9 | 6.0 | 2.2e-09 | -0.87 | 0.02 | 0.93 | FALSE |
16 | GTEx | Skin Not Sun Exposed Suprapubic | ZXDC | 0.21 | 0.12 | lasso | 4 | 0.12 | 6.5e-07 | -5.9 | 6.0 | 2.6e-09 | -0.89 | 0.02 | 0.98 | FALSE |
17 | GTEx | Skin Sun Exposed Lower leg | ZXDC | 0.22 | 0.12 | enet | 28 | 0.13 | 6.8e-11 | -5.9 | 5.7 | 1.5e-08 | -0.81 | 0.02 | 0.98 | FALSE |
18 | GTEx | Spleen | ZXDC | 0.34 | 0.18 | enet | 5 | 0.15 | 9.9e-05 | -6.3 | 5.4 | 5.3e-08 | -0.94 | 0.01 | 0.98 | FALSE |
19 | GTEx | Stomach | ZXDC | 0.13 | 0.10 | lasso | 2 | 0.08 | 1.7e-04 | -6.1 | 6.1 | 1.1e-09 | -0.81 | 0.02 | 0.97 | FALSE |
20 | GTEx | Thyroid | ZXDC | 0.27 | 0.16 | lasso | 5 | 0.21 | 4.4e-16 | -5.9 | 6.3 | 2.2e-10 | -0.84 | 0.02 | 0.98 | TRUE |
21 | METSIM | Adipose | ZXDC | 0.13 | 0.15 | lasso | 11 | 0.16 | 5.2e-24 | -6.0 | 6.0 | 1.7e-09 | -0.86 | 0.02 | 0.98 | FALSE |
22 | The Cancer Genome Atlas | Breast Invasive Carcinoma | UROC1 | 0.02 | 0.02 | enet | 5 | 0.02 | 4.9e-05 | -5.6 | -5.9 | 4.0e-09 | 0.70 | 0.06 | 0.92 | FALSE |
23 | The Cancer Genome Atlas | Glioblastoma Multiforme | UROC1 | 0.30 | 0.14 | lasso | 7 | 0.12 | 1.4e-04 | -4.7 | -5.2 | 1.6e-07 | 0.74 | 0.05 | 0.83 | FALSE |
24 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | UROC1 | 0.12 | 0.12 | lasso | 4 | 0.14 | 3.0e-08 | -6.1 | -5.9 | 3.1e-09 | 0.78 | 0.02 | 0.98 | FALSE |
25 | The Cancer Genome Atlas | Lung Adenocarcinoma | UROC1 | 0.05 | 0.05 | lasso | 4 | 0.05 | 1.6e-06 | -5.8 | -5.8 | 6.5e-09 | 0.71 | 0.08 | 0.92 | FALSE |
26 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | UROC1 | 0.12 | 0.05 | blup | 88 | 0.05 | 3.6e-04 | -4.7 | -6.3 | 2.5e-10 | 0.79 | 0.03 | 0.94 | FALSE |
27 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | UROC1 | 0.18 | 0.01 | enet | 15 | 0.09 | 9.0e-05 | -4.7 | -5.2 | 2.4e-07 | 0.57 | 0.03 | 0.56 | FALSE |
28 | The Cancer Genome Atlas | Rectum Adenocarcinoma | CHST13 | 0.35 | 0.07 | blup | 66 | 0.07 | 1.1e-02 | -4.2 | 6.0 | 1.5e-09 | -0.41 | 0.04 | 0.07 | FALSE |