Best TWAS P=1.09e-08 · Best GWAS P=8.09e-08 conditioned to 0.00957
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | LOC286186 | 0.29 | 0.31 | enet | 36 | 0.41 | 1.4e-53 | -5.3 | 5.2 | 2.1e-07 | 0.65 | 0.01 | 0.99 | FALSE |
2 | GTEx | Adipose Subcutaneous | CTD-3025N20.3 | 0.18 | 0.26 | enet | 12 | 0.26 | 2.4e-21 | -5.0 | 5.2 | 2.0e-07 | 0.57 | 0.03 | 0.96 | FALSE |
3 | GTEx | Adrenal Gland | CTD-3025N20.3 | 0.16 | 0.12 | lasso | 7 | 0.12 | 6.6e-05 | -5.0 | 5.4 | 7.0e-08 | 0.58 | 0.03 | 0.97 | FALSE |
4 | GTEx | Artery Coronary | CTD-3025N20.3 | 0.36 | 0.30 | lasso | 5 | 0.32 | 1.2e-11 | -5.0 | 5.1 | 2.7e-07 | 0.54 | 0.04 | 0.96 | FALSE |
5 | GTEx | Artery Tibial | CTD-3025N20.3 | 0.24 | 0.28 | lasso | 6 | 0.26 | 1.4e-20 | -5.0 | 5.2 | 2.2e-07 | 0.56 | 0.04 | 0.96 | FALSE |
6 | GTEx | Brain Caudate basal ganglia | CTD-3025N20.3 | 0.28 | 0.24 | lasso | 3 | 0.26 | 3.2e-08 | -5.0 | 5.1 | 2.6e-07 | 0.56 | 0.04 | 0.96 | FALSE |
7 | GTEx | Brain Cerebellar Hemisphere | CTD-3025N20.3 | 0.34 | 0.32 | enet | 27 | 0.40 | 1.6e-11 | -5.0 | 5.4 | 8.0e-08 | 0.64 | 0.04 | 0.96 | FALSE |
8 | GTEx | Brain Cerebellum | CTD-3025N20.3 | 0.34 | 0.39 | enet | 19 | 0.34 | 7.4e-11 | -5.0 | 5.2 | 2.5e-07 | 0.69 | 0.04 | 0.96 | FALSE |
9 | GTEx | Brain Hippocampus | CTD-3025N20.3 | 0.20 | 0.15 | lasso | 6 | 0.10 | 2.1e-03 | -4.9 | 5.2 | 2.3e-07 | 0.57 | 0.03 | 0.84 | FALSE |
10 | GTEx | Brain Hypothalamus | CTD-3025N20.3 | 0.34 | 0.35 | lasso | 5 | 0.32 | 2.2e-08 | -5.0 | 5.2 | 2.0e-07 | 0.54 | 0.04 | 0.96 | FALSE |
11 | GTEx | Breast Mammary Tissue | CTD-3025N20.3 | 0.24 | 0.26 | lasso | 9 | 0.26 | 8.5e-14 | -5.0 | 5.3 | 1.3e-07 | 0.60 | 0.04 | 0.96 | FALSE |
12 | GTEx | Breast Mammary Tissue (Female) | CTD-3025N20.3 | 0.27 | 0.22 | lasso | 7 | 0.21 | 6.9e-07 | -5.0 | 5.4 | 6.6e-08 | 0.62 | 0.04 | 0.96 | FALSE |
13 | GTEx | Esophagus Mucosa | ARMC1 | 0.15 | 0.02 | enet | 14 | 0.02 | 1.2e-02 | -5.0 | -5.6 | 2.1e-08 | -0.34 | 0.04 | 0.87 | FALSE |
14 | GTEx | Heart Atrial Appendage | CTD-3025N20.3 | 0.22 | 0.20 | lasso | 3 | 0.20 | 3.6e-09 | -5.0 | 5.2 | 2.0e-07 | 0.59 | 0.04 | 0.96 | FALSE |
15 | GTEx | Lung | CTD-3025N20.3 | 0.13 | 0.12 | lasso | 5 | 0.12 | 1.5e-09 | -5.3 | 5.4 | 5.7e-08 | 0.60 | 0.02 | 0.98 | FALSE |
16 | GTEx | Muscle Skeletal | CTD-3025N20.3 | 0.15 | 0.14 | lasso | 9 | 0.17 | 2.4e-16 | -5.0 | 5.7 | 1.1e-08 | 0.56 | 0.04 | 0.96 | TRUE |
17 | GTEx | Pancreas | CTD-3025N20.3 | 0.12 | 0.08 | enet | 12 | 0.07 | 5.7e-04 | -5.0 | 5.3 | 1.0e-07 | 0.57 | 0.03 | 0.95 | FALSE |
18 | GTEx | Skin Not Sun Exposed Suprapubic | CTD-3025N20.3 | 0.28 | 0.28 | enet | 18 | 0.28 | 1.3e-15 | -5.0 | 5.3 | 9.8e-08 | 0.57 | 0.04 | 0.96 | FALSE |
19 | GTEx | Testis | CTD-3025N20.3 | 0.27 | 0.28 | enet | 21 | 0.31 | 2.6e-14 | -5.0 | 5.6 | 2.3e-08 | 0.53 | 0.04 | 0.96 | FALSE |
20 | METSIM | Adipose | CTD-3025N20.3 | 0.08 | 0.07 | enet | 18 | 0.08 | 2.8e-12 | -4.2 | 5.2 | 2.5e-07 | 0.60 | 0.03 | 0.97 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | CTD-3025N20.2 | 0.36 | 0.35 | lasso | 14 | 0.43 | 4.1e-61 | -5.3 | 5.2 | 2.2e-07 | 0.63 | 0.01 | 0.99 | FALSE |