2027 significantly associated models · 421 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 22109370 | 22664774 | 2 | 1 | 1.9e-09 | 2.2e-09 | 9.2e-03 | 81 | CDC42 |
2 | 1 | 28762508 | 30073828 | 2 | 1 | 7.5e-09 | 1.2e-07 | 4.0e-01 | 98 | TMEM200B |
3 | 1 | 31402148 | 32762733 | 1 | 1 | 1.3e-12 | 2.5e-12 | 1.0e+00 | 100 | PEF1 |
4 | 1 | 40799427 | 42542658 | 2 | 2 | 8.9e-14 | 7.7e-16 | 2.8e-05 | 73 | FOXO6 SCMH1 |
5 | 1 | 43152610 | 45153116 | 5 | 2 | 3.5e-10 | 1.6e-10 | 1.0e+00 | 100 | HYI ST3GAL3 |
6 | 1 | 71163715 | 73435171 | 1 | 1 | 2.1e-24 | 1.6e-20 | 5.8e-08 | 66 | NEGR1 |
7 | 1 | 109154974 | 110750277 | 6 | 1 | 2.2e-11 | 1.6e-10 | 3.8e-01 | 98 | SYPL2 |
8 | 1 | 153241677 | 154638826 | 2 | 1 | 5.7e-08 | 3.5e-08 | 1.0e+00 | 100 | RP11-422P24.10 |
9 | 1 | 171053153 | 172474017 | 1 | 1 | 8.7e-08 | 2.3e-07 | 5.4e-01 | 99 | METTL13 |
10 | 1 | 173885712 | 175194390 | 1 | 1 | 5.2e-08 | 5.3e-08 | 2.3e-01 | 95 | RABGAP1L |
11 | 1 | 192845807 | 193470234 | 1 | 1 | 2.4e-07 | 9.4e-07 | 1.0e+00 | 100 | CDC73 |
12 | 1 | 201164764 | 202607593 | 2 | 1 | 3.1e-10 | 8.4e-09 | 3.6e-01 | 98 | LMOD1 |
13 | 2 | 23453834 | 24924438 | 1 | 1 | 7.1e-09 | 1.3e-08 | 3.5e-03 | 74 | UBXN2A |
14 | 2 | 70804467 | 72356449 | 1 | 1 | 1.8e-14 | 3.9e-14 | 1.0e+00 | 100 | ZNF638 |
15 | 2 | 72774203 | 74654861 | 6 | 2 | 6.5e-11 | 3.7e-09 | 2.3e-01 | 96 | FBXO41 TPRKB |
16 | 2 | 99468341 | 101731705 | 3 | 2 | 2.4e-14 | 1.5e-15 | 7.2e-03 | 89 | AFF3 CHST10 |
17 | 2 | 117979194 | 119470084 | 1 | 1 | 2.0e-09 | 6.9e-07 | 4.2e-01 | 97 | CCDC93 |
18 | 2 | 161297929 | 162798581 | 2 | 1 | 4.6e-14 | 5.2e-13 | 1.0e+00 | 100 | TANK |
19 | 2 | 166020295 | 167506382 | 1 | 1 | 9.0e-09 | 3.1e-09 | 1.0e+00 | 100 | TTC21B |
20 | 3 | 23234618 | 24686628 | 4 | 1 | 3.3e-12 | 1.3e-16 | 6.9e-08 | 57 | NKIRAS1 |
21 | 3 | 40537829 | 41986787 | 1 | 1 | 2.9e-07 | 1.2e-07 | 1.5e-01 | 93 | CTNNB1 |
22 | 3 | 47911521 | 51298452 | 40 | 1 | 3.1e-32 | 3.7e-29 | 8.1e-01 | 100 | RNF123 |
23 | 3 | 51616334 | 53778875 | 17 | 1 | 3.1e-12 | 3.5e-12 | 1.4e-01 | 95 | NT5DC2 |
24 | 3 | 70757099 | 71880670 | 1 | 1 | 3.1e-09 | 3.9e-11 | 9.3e-05 | 65 | FOXP1 |
25 | 3 | 93537290 | 94028192 | 2 | 1 | 3.1e-08 | 1.6e-06 | 2.5e-01 | 94 | STX19 |
26 | 3 | 125733081 | 127373586 | 1 | 1 | 2.9e-07 | 5.4e-06 | 8.9e-06 | 5 | CHCHD6 |
27 | 3 | 134986214 | 137253713 | 5 | 1 | 1.3e-09 | 1.3e-09 | 1.7e-06 | 38 | STAG1 |
28 | 4 | 17104059 | 18507692 | 2 | 1 | 5.6e-13 | 5.6e-13 | 1.0e+00 | 100 | NCAPG |
29 | 4 | 105373669 | 107092169 | 2 | 1 | 1.6e-17 | 4.2e-23 | 4.4e-07 | 74 | PPA2 |
30 | 4 | 151347355 | 153373680 | 6 | 1 | 6.9e-13 | 8.9e-13 | 8.1e-02 | 94 | FAM160A1 |
31 | 5 | 65194584 | 67161259 | 2 | 1 | 1.3e-07 | 1.2e-07 | 1.0e+00 | 100 | CD180 |
32 | 5 | 87104604 | 88677293 | 1 | 1 | 5.7e-08 | 2.8e-14 | 4.3e-09 | 40 | LINC00461 |
33 | 5 | 92051598 | 93624507 | 2 | 1 | 1.2e-08 | 1.9e-10 | 5.6e-04 | 71 | NR2F1-AS1 |
34 | 5 | 106016464 | 107704881 | 1 | 1 | 4.9e-09 | 5.7e-08 | 1.5e-05 | 37 | EFNA5 |
35 | 5 | 138753725 | 141294691 | 22 | 1 | 3.0e-15 | 7.9e-12 | 1.3e-03 | 78 | ZMAT2 |
36 | 5 | 176132977 | 177591495 | 3 | 1 | 3.6e-11 | 3.2e-11 | 1.0e+00 | 100 | DBN1 |
37 | 6 | 10842333 | 12277622 | 1 | 1 | 1.2e-09 | 5.3e-10 | 4.9e-02 | 90 | TMEM170B |
38 | 6 | 13226792 | 14671877 | 1 | 1 | 5.9e-08 | 7.7e-08 | 5.5e-08 | -2 | RNF182 |
39 | 6 | 75766579 | 77324522 | 1 | 1 | 3.9e-08 | 3.9e-08 | 2.4e-01 | 95 | MYO6 |
40 | 6 | 108183628 | 109704062 | 1 | 1 | 1.9e-12 | 7.9e-22 | 5.7e-11 | 53 | FOXO3 |
41 | 6 | 154891396 | 156330580 | 1 | 1 | 4.7e-08 | 3.5e-07 | 2.1e-01 | 94 | TFB1M |
42 | 7 | 21336058 | 22188630 | 1 | 1 | 1.7e-07 | 1.1e-05 | 1.5e-01 | 90 | DNAH11 |
43 | 7 | 43964217 | 45583220 | 3 | 2 | 1.6e-10 | 4.1e-11 | 2.3e-03 | 79 | H2AFV OGDH |
44 | 7 | 70546596 | 72313144 | 1 | 1 | 2.3e-14 | 2.2e-15 | 1.0e+00 | 100 | CALN1 |
45 | 7 | 109603832 | 111895681 | 1 | 1 | 7.7e-08 | 2.3e-06 | 2.8e-01 | 95 | IMMP2L |
46 | 7 | 126529931 | 128425768 | 4 | 2 | 6.3e-15 | 2.3e-12 | 1.7e-01 | 96 | SND1 ZNF800 |
47 | 7 | 132692468 | 133981227 | 1 | 1 | 2.2e-07 | 1.9e-14 | 1.6e-08 | 46 | EXOC4 |
48 | 7 | 154046765 | 155442850 | 1 | 1 | 1.8e-07 | 9.6e-07 | 8.3e-01 | 100 | RP11-5C23.1 |
49 | 8 | 30012514 | 31433801 | 1 | 1 | 7.6e-08 | 3.2e-09 | 2.6e-05 | 50 | TEX15 |
50 | 8 | 65740418 | 67245848 | 4 | 1 | 1.1e-08 | 8.1e-08 | 9.6e-03 | 77 | CTD-3025N20.3 |
51 | 8 | 92277765 | 93810859 | 1 | 1 | 2.4e-13 | 3.6e-14 | 2.0e-02 | 91 | RUNX1T1 |
52 | 9 | 34382175 | 35776190 | 1 | 1 | 2.8e-07 | 3.6e-06 | 7.4e-01 | 100 | FANCG |
53 | 9 | 97966874 | 100366953 | 6 | 2 | 7.2e-09 | 2.0e-08 | 8.6e-01 | 100 | AAED1 PTCH1 |
54 | 9 | 110932294 | 112391421 | 1 | 1 | 9.1e-08 | 1.3e-07 | 2.2e-01 | 95 | IKBKAP |
55 | 9 | 131169528 | 132601229 | 5 | 1 | 7.2e-10 | 9.7e-10 | 1.0e+00 | 100 | IER5L |
56 | 10 | 64195778 | 66034105 | 5 | 1 | 2.3e-11 | 2.9e-10 | 2.9e-01 | 97 | NRBF2 |
57 | 10 | 73790819 | 74283057 | 1 | 1 | 4.9e-08 | 7.0e-07 | 1.9e-02 | 78 | DDIT4 |
58 | 10 | 101291593 | 102725979 | 3 | 1 | 1.5e-09 | 5.2e-09 | 2.3e-02 | 85 | CWF19L1 |
59 | 10 | 102853189 | 104956035 | 6 | 3 | 3.6e-13 | 1.9e-16 | 1.8e-02 | 92 | GBF1 HPS6 NPM3 |
60 | 10 | 133089003 | 134482926 | 1 | 1 | 7.1e-08 | 1.3e-07 | 9.9e-04 | 61 | BNIP3 |
61 | 11 | 605856 | 2029278 | 1 | 1 | 5.0e-08 | 8.0e-07 | 3.9e-03 | 66 | TOLLIP |
62 | 11 | 46543524 | 48559571 | 10 | 1 | 1.3e-09 | 2.6e-08 | 9.8e-01 | 100 | MTCH2 |
63 | 11 | 56774260 | 58178587 | 2 | 1 | 6.9e-08 | 2.2e-07 | 1.8e-02 | 79 | MED19 |
64 | 11 | 63295034 | 64687797 | 1 | 1 | 1.0e-07 | 4.8e-08 | 1.5e-02 | 80 | TRPT1 |
65 | 11 | 73340690 | 73882260 | 1 | 1 | 1.1e-07 | 1.2e-04 | 3.4e-02 | 70 | PAAF1 |
66 | 11 | 94805896 | 96276010 | 4 | 1 | 8.1e-09 | 1.2e-08 | 1.0e+00 | 100 | MTMR2 |
67 | 12 | 48605088 | 50199949 | 4 | 1 | 8.6e-13 | 2.5e-14 | 1.1e-03 | 82 | RP11-386G11.5 |
68 | 12 | 55694116 | 57125879 | 3 | 1 | 6.4e-08 | 1.6e-07 | 1.0e+00 | 100 | RPS26 |
69 | 12 | 57249600 | 59046845 | 4 | 1 | 1.1e-11 | 8.9e-12 | 4.9e-03 | 83 | TSPAN31 |
70 | 12 | 92920883 | 93568130 | 1 | 1 | 8.3e-08 | 3.1e-09 | 8.9e-06 | 44 | EEA1 |
71 | 12 | 120215864 | 122150383 | 3 | 1 | 9.6e-08 | 3.9e-07 | 3.7e-02 | 83 | RNF10 |
72 | 12 | 122713991 | 124591385 | 10 | 1 | 3.0e-09 | 3.1e-09 | 2.8e-01 | 97 | ABCB9 |
73 | 14 | 26213713 | 27761335 | 1 | 1 | 1.2e-07 | 1.1e-09 | 3.0e-06 | 41 | NOVA1 |
74 | 14 | 36802009 | 37298875 | 1 | 1 | 2.3e-07 | 1.5e-09 | 1.7e-03 | 73 | NKX2-8 |
75 | 14 | 59246693 | 61035024 | 3 | 1 | 1.4e-08 | 1.5e-07 | 7.0e-02 | 88 | CCDC175 |
76 | 14 | 101776302 | 102263464 | 1 | 1 | 1.3e-07 | 7.7e-06 | 8.2e-01 | 100 | DIO3OS |
77 | 14 | 103161201 | 104892153 | 11 | 8 | 8.7e-14 | 1.2e-13 | 1.0e+00 | 100 | BAG5 CKB MARK3 RP11-73M18.6 RP11-73M18.8 ZFYVE21 |
78 | 15 | 51040798 | 52612484 | 2 | 1 | 2.9e-08 | 5.7e-11 | 6.1e-07 | 42 | SCG3 |
79 | 15 | 63657737 | 64367745 | 1 | 1 | 2.1e-07 | 1.5e-07 | 1.0e+00 | 100 | HERC1 |
80 | 15 | 81636267 | 84072745 | 8 | 1 | 3.8e-11 | 6.5e-10 | 3.2e-01 | 97 | RP11-152F13.3 |
81 | 16 | 207611 | 1735921 | 2 | 1 | 6.2e-09 | 1.4e-06 | 2.0e-02 | 77 | SOX8 |
82 | 16 | 11373301 | 13364255 | 1 | 2 | 2.7e-08 | 2.8e-10 | 4.4e-03 | 80 | SNX29 |
83 | 16 | 27412414 | 30141258 | 27 | 1 | 8.1e-30 | 1.2e-24 | 8.4e-01 | 100 | EIF3CL |
84 | 16 | 52772129 | 54235440 | 2 | 1 | 8.2e-17 | 1.8e-14 | 7.5e-01 | 100 | RBL2 |
85 | 16 | 67281662 | 68988905 | 5 | 1 | 2.1e-09 | 3.5e-08 | 7.8e-01 | 100 | ESRP2 |
86 | 16 | 71070698 | 72657531 | 5 | 1 | 2.6e-10 | 3.8e-09 | 1.7e-01 | 95 | ATXN1L |
87 | 17 | 7816838 | 8315649 | 1 | 1 | 2.6e-07 | 1.6e-06 | 2.9e-03 | 61 | VAMP2 |
88 | 17 | 27032827 | 29547601 | 4 | 1 | 1.4e-08 | 5.9e-08 | 1.4e-04 | 51 | TAOK1 |
89 | 17 | 34146026 | 35675511 | 6 | 1 | 1.1e-10 | 6.8e-10 | 5.4e-01 | 99 | GGNBP2 |
90 | 17 | 42814955 | 45597098 | 15 | 1 | 8.2e-11 | 1.7e-08 | 1.3e-01 | 93 | ARL17B |
91 | 17 | 55681549 | 57989860 | 11 | 1 | 8.9e-14 | 1.9e-13 | 1.0e+00 | 100 | TRIM37 |
92 | 17 | 61008762 | 62461735 | 1 | 1 | 4.3e-08 | 1.4e-06 | 3.0e-02 | 80 | MAP3K3 |
93 | 19 | 12215638 | 13611106 | 1 | 1 | 1.1e-07 | 1.9e-09 | 7.4e-09 | 7 | CTD-2659N19.10 |
94 | 19 | 17963878 | 18640573 | 2 | 2 | 1.6e-09 | 5.9e-10 | 1.3e-01 | 94 | JUND MAST3 |
95 | 19 | 36508392 | 37950253 | 1 | 1 | 5.9e-09 | 2.2e-05 | 7.4e-01 | 99 | ZNF850 |
96 | 19 | 45569009 | 46073472 | 1 | 1 | 2.3e-07 | 1.8e-07 | 1.0e+00 | 100 | CKM |
97 | 19 | 46923752 | 48406374 | 2 | 2 | 2.3e-07 | 3.9e-08 | 2.2e-02 | 83 | GRLF1 SAE1 |
98 | 19 | 58300066 | 59095126 | 1 | 1 | 5.9e-08 | 1.8e-09 | 6.0e-03 | 79 | SLC27A5 |
99 | 20 | 33592248 | 35029669 | 3 | 1 | 5.6e-10 | 3.3e-08 | 5.8e-01 | 99 | RBM39 |
100 | 20 | 46551079 | 48591758 | 7 | 2 | 1.3e-21 | 7.3e-17 | 5.1e-01 | 99 | CSE1L PREX1 |
101 | 21 | 18271223 | 19680363 | 1 | 1 | 2.1e-07 | 7.1e-08 | 1.0e+00 | 100 | BTG3 |
102 | 21 | 39849553 | 41419624 | 4 | 1 | 1.7e-11 | 6.6e-12 | 7.4e-02 | 93 | HMGN1 |
103 | 22 | 30390990 | 32057501 | 5 | 1 | 3.6e-08 | 6.2e-08 | 1.0e+00 | 100 | C22orf27 |
104 | 22 | 37394391 | 39042221 | 4 | 1 | 2.6e-08 | 4.2e-08 | 3.7e-03 | 72 | ANKRD54 |
105 | 22 | 39064209 | 40571499 | 3 | 1 | 1.9e-13 | 2.5e-13 | 4.6e-04 | 77 | MGAT3 |
106 | 22 | 40903421 | 43229137 | 14 | 2 | 9.2e-12 | 1.1e-09 | 4.1e-01 | 98 | RP4-756G23.5 WBP2NL |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Vagina | 8 | 1.26 | 3.9 |
GTEx | Esophagus Gastroesophageal Junction | 27 | 1.87 | 3.6 |
GTEx | Ovary | 13 | 1.43 | 3.6 |
GTEx | Brain Cortex | 16 | 1.55 | 3.5 |
GTEx | Brain Frontal Cortex BA9 | 9 | 0.97 | 3.5 |
GTEx | Brain Putamen basal ganglia | 7 | 1.12 | 3.5 |
GTEx | Colon Sigmoid | 23 | 1.57 | 3.5 |
GTEx | Stomach | 23 | 1.58 | 3.5 |
GTEx | Breast Mammary Tissue | 33 | 1.67 | 3.4 |
GTEx | Cells EBV-transformed lymphocytes | 24 | 1.69 | 3.4 |
GTEx | Colon Transverse | 28 | 1.36 | 3.4 |
GTEx | Esophagus Mucosa | 49 | 1.48 | 3.4 |
GTEx | Esophagus Muscularis | 50 | 1.55 | 3.4 |
GTEx | Heart Atrial Appendage | 29 | 1.84 | 3.4 |
GTEx | Liver | 12 | 1.68 | 3.4 |
GTEx | Small Intestine Terminal Ileum | 4 | 0.87 | 3.4 |
GTEx | Spleen | 18 | 1.28 | 3.4 |
GTEx | Artery Aorta | 51 | 1.71 | 3.3 |
GTEx | Artery Coronary | 18 | 1.52 | 3.3 |
GTEx | Artery Tibial | 57 | 1.52 | 3.3 |
GTEx | Brain Cerebellar Hemisphere | 18 | 1.21 | 3.3 |
GTEx | Brain Nucleus accumbens basal ganglia | 11 | 1.27 | 3.3 |
GTEx | Breast Mammary Tissue (Female) | 27 | 1.64 | 3.3 |
GTEx | Heart Left Ventricle | 28 | 1.83 | 3.3 |
GTEx | Lung | 43 | 1.50 | 3.3 |
GTEx | Muscle Skeletal | 45 | 1.56 | 3.3 |
GTEx | Skin Not Sun Exposed Suprapubic | 29 | 1.18 | 3.3 |
GTEx | Skin Sun Exposed Lower leg | 49 | 1.35 | 3.3 |
GTEx | Uterus | 9 | 1.58 | 3.3 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 17 | 1.67 | 3.3 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 7 | 1.32 | 3.3 |
GTEx | Adipose Subcutaneous | 45 | 1.29 | 3.2 |
GTEx | Adipose Visceral Omentum | 29 | 1.42 | 3.2 |
GTEx | Brain Cerebellum | 27 | 1.36 | 3.2 |
GTEx | Brain Hippocampus | 8 | 1.53 | 3.2 |
GTEx | Brain Hypothalamus | 5 | 0.85 | 3.2 |
GTEx | Breast Mammary Tissue (Male) | 13 | 1.09 | 3.2 |
GTEx | Nerve Tibial | 64 | 1.48 | 3.2 |
GTEx | Pancreas | 21 | 1.29 | 3.2 |
GTEx | Pituitary | 18 | 1.62 | 3.2 |
GTEx | Prostate | 8 | 0.96 | 3.2 |
GTEx | Brain Caudate basal ganglia | 12 | 1.30 | 3.1 |
GTEx | Cells Transformed fibroblasts | 61 | 1.45 | 3.1 |
GTEx | Testis | 33 | 1.05 | 3.1 |
GTEx | Whole Blood | 24 | 1.20 | 3.1 |
ROSMAP | Brain Pre-frontal Cortex | 53 | 1.21 | 3.1 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 12 | 1.09 | 3.1 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 28 | 1.77 | 3.1 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 20 | 1.19 | 3.1 |
GTEx | Thyroid | 47 | 1.18 | 3.0 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 26 | 1.27 | 3.0 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 60 | 1.40 | 3.0 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 20 | 1.81 | 3.0 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 18 | 1.09 | 3.0 |
GTEx | Adrenal Gland | 12 | 0.82 | 2.9 |
CommonMind | Brain Pre-frontal Cortex | 57 | 1.06 | 2.9 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 21 | 1.27 | 2.9 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 31 | 1.14 | 2.9 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 29 | 0.99 | 2.9 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 30 | 1.20 | 2.9 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 15 | 1.41 | 2.9 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 6 | 1.18 | 2.9 |
METSIM | Adipose | 54 | 1.17 | 2.8 |
NTR | Blood | 24 | 1.00 | 2.8 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 28 | 1.36 | 2.8 |
The Cancer Genome Atlas | Esophageal Carcinoma | 9 | 1.31 | 2.8 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 42 | 1.03 | 2.8 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 15 | 1.14 | 2.8 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 62 | 1.34 | 2.8 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 12 | 0.94 | 2.8 |
The Cancer Genome Atlas | Thyroid Carcinoma | 53 | 1.03 | 2.8 |
YFS | Blood | 52 | 1.13 | 2.7 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 36 | 0.82 | 2.7 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 5 | 0.72 | 2.6 |