[Hub]/) : Traits : Lupus : ←

chr22:21,075,537-22,685,340

Best TWAS P=4.13e-15 · Best GWAS P=8.33e-14 conditioned to 0.32

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
26	METSIM	Adipose	CCDC116	0.06	0.07	enet	22	0.08	4.6e-12	7.0	-7.9	4.1e-15	-0.89	0.03	0.97	TRUE
2	GTEx	Adipose Subcutaneous	CCDC116	0.15	0.12	lasso	7	0.13	1.7e-10	7.4	-7.5	7.6e-14	-0.94	0.01	0.99	FALSE
33	The Cancer Genome Atlas	Cervical Squamous Cell Carcinoma	CCDC116	0.05	0.06	lasso	1	0.05	1.3e-03	7.5	-7.5	8.3e-14	-1.00	0.01	0.89	FALSE
40	The Cancer Genome Atlas	Pancreatic Adenocarcinoma	CCDC116	0.07	0.02	blup	40	0.03	1.5e-02	7.4	-7.4	1.0e-13	-0.92	0.01	0.78	FALSE
20	GTEx	Skin Not Sun Exposed Suprapubic	CCDC116	0.12	0.05	lasso	5	0.02	2.1e-02	7.4	-7.4	1.5e-13	-0.92	0.02	0.94	FALSE
15	GTEx	Esophagus Muscularis	CCDC116	0.15	0.20	lasso	1	0.19	6.5e-12	7.4	-7.4	1.7e-13	-0.96	0.01	0.99	FALSE
37	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	YDJC	0.04	0.00	blup	34	0.02	4.0e-02	7.0	7.4	1.7e-13	0.91	0.01	0.64	FALSE
43	The Cancer Genome Atlas	Thyroid Carcinoma	CCDC116	0.05	0.07	blup	40	0.07	4.6e-07	6.9	-7.4	1.7e-13	-0.93	0.02	0.98	FALSE
8	GTEx	Brain Cortex	CCDC116	0.17	0.17	lasso	2	0.15	7.3e-05	7.3	-7.3	2.8e-13	-0.96	0.02	0.95	FALSE
16	GTEx	Heart Atrial Appendage	CCDC116	0.11	0.03	lasso	3	0.05	1.8e-03	7.0	-7.3	2.8e-13	-0.92	0.03	0.94	FALSE
9	GTEx	Breast Mammary Tissue	CCDC116	0.15	0.12	enet	20	0.13	5.1e-07	7.4	-7.3	3.0e-13	-0.81	0.02	0.98	FALSE
18	GTEx	Nerve Tibial	CCDC116	0.22	0.25	enet	9	0.29	1.8e-20	7.2	-7.3	3.1e-13	-0.96	0.02	0.98	FALSE
38	The Cancer Genome Atlas	Brain Lower Grade Glioma	CCDC116	0.07	0.12	blup	40	0.11	1.2e-12	7.0	-7.3	3.2e-13	-0.92	0.02	0.98	FALSE
17	GTEx	Lung	CCDC116	0.12	0.15	lasso	2	0.14	5.3e-11	7.3	-7.3	3.3e-13	-0.95	0.02	0.98	FALSE
6	GTEx	Artery Tibial	CCDC116	0.14	0.15	lasso	5	0.14	2.7e-11	7.4	-7.3	3.7e-13	-0.96	0.01	0.99	FALSE
24	GTEx	Thyroid	HIC2	0.07	0.00	lasso	4	0.00	5.9e-01	7.3	7.3	3.7e-13	0.96	0.03	0.64	FALSE
14	GTEx	Esophagus Mucosa	CCDC116	0.10	0.06	lasso	4	0.06	8.7e-05	7.4	-7.3	3.9e-13	-0.96	0.03	0.97	FALSE
4	GTEx	Artery Aorta	CCDC116	0.18	0.18	lasso	10	0.18	5.5e-10	7.4	-7.3	4.0e-13	-0.96	0.02	0.98	FALSE
13	GTEx	Esophagus Gastroesophageal Junction	CCDC116	0.20	0.08	lasso	8	0.12	6.0e-05	7.1	-7.2	4.2e-13	-0.96	0.05	0.91	FALSE
21	GTEx	Skin Sun Exposed Lower leg	CCDC116	0.07	0.08	enet	8	0.08	6.6e-07	7.4	-7.2	4.5e-13	-0.87	0.02	0.98	FALSE
29	YFS	Blood	UBE2L3	0.13	0.25	bslmm	330	0.25	1.3e-82	7.1	7.2	5.7e-13	0.96	0.02	0.98	FALSE
31	The Cancer Genome Atlas	Breast Invasive Carcinoma	CCDC116	0.04	0.04	blup	40	0.05	1.1e-09	7.2	-7.2	7.4e-13	-0.84	0.02	0.98	FALSE
23	GTEx	Thyroid	CCDC116	0.10	0.07	lasso	4	0.07	3.7e-06	7.2	-7.2	8.1e-13	-0.96	0.02	0.98	FALSE
39	The Cancer Genome Atlas	Brain Lower Grade Glioma	YDJC	0.08	0.14	blup	34	0.15	2.9e-16	7.3	7.1	9.1e-13	0.94	0.02	0.98	FALSE
41	The Cancer Genome Atlas	Pheochromocytoma and Paraganglioma	CCDC116	0.11	0.14	enet	14	0.12	2.3e-05	7.1	-7.1	9.2e-13	-0.96	0.02	0.98	FALSE
36	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	CCDC116	0.02	0.02	lasso	2	0.02	1.4e-03	7.0	-7.1	9.7e-13	-0.91	0.02	0.82	FALSE
22	GTEx	Spleen	CCDC116	0.20	0.07	enet	15	0.14	1.8e-04	7.4	-7.1	1.3e-12	-0.85	0.03	0.85	FALSE
1	CommonMind	Brain Pre-frontal Cortex	UBE2L3	0.10	0.12	enet	16	0.11	9.7e-14	7.3	7.0	1.8e-12	0.94	0.01	0.99	FALSE
3	GTEx	Adipose Visceral Omentum	CCDC116	0.09	0.05	lasso	3	0.03	1.4e-02	7.1	-7.0	2.5e-12	-0.96	0.05	0.92	FALSE
25	GTEx	Whole Blood	UBE2L3	0.06	0.00	enet	22	0.01	4.0e-02	6.9	7.0	3.3e-12	0.72	0.03	0.88	FALSE
7	GTEx	Brain Cerebellum	CCDC116	0.25	0.16	lasso	4	0.10	6.5e-04	7.1	-6.9	5.1e-12	-0.96	0.03	0.94	FALSE
34	The Cancer Genome Atlas	Colon Adenocarcinoma	CCDC116	0.05	0.00	blup	40	0.02	1.8e-02	7.0	-6.9	6.7e-12	-0.88	0.01	0.60	FALSE
42	The Cancer Genome Atlas	Prostate Adenocarcinoma	CCDC116	0.06	0.05	blup	40	0.06	4.3e-07	7.2	-6.9	7.0e-12	-0.88	0.02	0.98	FALSE
5	GTEx	Artery Coronary	CCDC116	0.16	0.06	lasso	4	0.09	5.6e-04	7.1	-6.8	9.0e-12	-0.93	0.04	0.93	FALSE
10	GTEx	Breast Mammary Tissue (Female)	CCDC116	0.11	-0.01	enet	15	-0.01	5.7e-01	7.1	-6.8	1.5e-11	-0.80	0.03	0.67	FALSE
12	GTEx	Colon Transverse	CCDC116	0.15	0.03	enet	16	0.04	6.3e-03	7.2	-6.7	2.5e-11	-0.76	0.05	0.72	FALSE
35	The Cancer Genome Atlas	Glioblastoma Multiforme	CCDC116	0.10	0.06	blup	39	0.07	4.4e-03	7.5	-6.6	3.2e-11	-0.94	0.01	0.84	FALSE
32	The Cancer Genome Atlas	Breast Invasive Carcinoma	YDJC	0.02	0.00	blup	34	0.01	1.6e-03	-3.0	6.5	8.3e-11	0.73	0.01	0.24	FALSE
30	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	CCDC116	0.03	0.02	enet	12	0.02	5.1e-03	7.5	-6.3	2.2e-10	-0.86	0.01	0.77	FALSE
19	GTEx	Ovary	CCDC116	0.54	0.15	lasso	10	0.20	1.5e-05	7.4	-6.3	3.7e-10	-0.81	0.02	0.85	FALSE
11	GTEx	Colon Sigmoid	CCDC116	0.30	0.14	lasso	5	0.24	6.0e-09	3.0	-6.2	5.7e-10	-0.81	0.03	0.97	FALSE
27	METSIM	Adipose	UBE2L3	0.04	0.01	enet	18	0.02	1.2e-04	7.3	5.6	2.7e-08	0.55	0.03	0.95	FALSE
28	METSIM	Adipose	YDJC	0.05	0.04	enet	11	0.04	7.7e-07	7.0	5.2	1.9e-07	0.74	0.09	0.91	FALSE