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chr3:40,594,264-42,967,174

Best TWAS P=6.71e-20 · Best GWAS P=7.29e-20 conditioned to 1

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
54	The Cancer Genome Atlas	Thyroid Carcinoma	ULK4	0.30	0.46	enet	23	0.47	2.9e-51	9.1	9.1	6.7e-20	1.00	0.01	0.99	TRUE
48	The Cancer Genome Atlas	Prostate Adenocarcinoma	ULK4	0.18	0.26	enet	22	0.27	2.5e-28	9.1	9.1	1.0e-19	0.98	0.02	0.98	FALSE
43	The Cancer Genome Atlas	Lung Adenocarcinoma	ULK4	0.21	0.25	lasso	10	0.26	1.5e-29	9.0	9.0	1.8e-19	0.99	0.02	0.98	FALSE
31	YFS	Blood	ULK4	0.04	0.07	lasso	5	0.07	5.7e-21	9.0	9.0	2.0e-19	1.00	0.02	0.98	FALSE
45	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	ULK4	0.16	0.14	lasso	4	0.14	7.8e-10	9.1	9.0	2.1e-19	0.99	0.02	0.98	FALSE
41	The Cancer Genome Atlas	Brain Lower Grade Glioma	ULK4	0.22	0.36	lasso	10	0.35	1.5e-41	8.9	8.9	3.7e-19	0.99	0.02	0.98	FALSE
33	The Cancer Genome Atlas	Breast Invasive Carcinoma	ULK4	0.20	0.30	lasso	9	0.32	1.1e-66	9.1	8.9	4.8e-19	0.99	0.01	0.99	FALSE
17	GTEx	Esophagus Mucosa	ULK4	0.34	0.24	lasso	9	0.26	3.0e-17	9.1	8.9	5.6e-19	0.99	0.02	0.98	FALSE
13	GTEx	Cells EBV-transformed lymphocytes	ULK4	0.54	0.34	enet	49	0.39	7.3e-14	9.1	8.9	7.4e-19	0.96	0.02	0.98	FALSE
15	GTEx	Colon Transverse	ULK4	0.24	0.05	lasso	8	0.03	9.1e-03	8.9	8.9	8.3e-19	0.98	0.05	0.91	FALSE
21	GTEx	Nerve Tibial	ULK4	0.31	0.27	lasso	10	0.31	1.9e-22	8.7	8.8	9.1e-19	0.98	0.22	0.78	FALSE
40	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	ULK4	0.32	0.36	lasso	17	0.36	3.5e-21	8.7	8.8	9.9e-19	0.98	0.03	0.97	FALSE
16	GTEx	Esophagus Gastroesophageal Junction	ULK4	0.22	0.10	lasso	5	0.09	3.0e-04	8.7	8.8	1.0e-18	0.98	0.05	0.92	FALSE
47	The Cancer Genome Atlas	Pheochromocytoma and Paraganglioma	ULK4	0.28	0.31	lasso	13	0.33	5.8e-14	9.0	8.8	1.0e-18	0.97	0.03	0.97	FALSE
18	GTEx	Esophagus Muscularis	ULK4	0.20	0.18	enet	16	0.18	4.1e-11	8.7	8.8	1.1e-18	0.98	0.08	0.92	FALSE
39	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	ULK4	0.14	0.16	lasso	4	0.20	9.6e-22	9.1	8.8	1.2e-18	0.99	0.02	0.98	FALSE
22	GTEx	Pancreas	ULK4	0.47	0.10	lasso	8	0.17	1.4e-07	8.9	8.8	1.4e-18	0.95	0.03	0.97	FALSE
50	The Cancer Genome Atlas	Soft Tissue Sarcoma	ULK4	0.15	0.12	lasso	7	0.13	6.5e-08	9.0	8.8	1.6e-18	0.99	0.02	0.98	FALSE
36	The Cancer Genome Atlas	Esophageal Carcinoma	ULK4	0.30	0.18	blup	256	0.21	3.3e-07	8.6	8.8	2.1e-18	0.93	0.03	0.97	FALSE
35	The Cancer Genome Atlas	Colon Adenocarcinoma	ULK4	0.34	0.35	lasso	13	0.37	3.6e-22	8.6	8.8	2.2e-18	1.00	0.02	0.98	FALSE
38	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	ULK4	0.15	0.22	enet	35	0.24	5.6e-27	8.7	8.7	2.3e-18	0.99	0.02	0.98	FALSE
52	The Cancer Genome Atlas	Stomach Adenocarcinoma	ULK4	0.18	0.23	enet	13	0.24	5.3e-17	8.7	8.7	2.5e-18	0.98	0.03	0.97	FALSE
32	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	ULK4	0.16	0.18	lasso	12	0.20	7.9e-17	9.0	8.7	3.4e-18	0.98	0.03	0.97	FALSE
37	The Cancer Genome Atlas	Glioblastoma Multiforme	ULK4	0.37	0.31	lasso	9	0.31	3.1e-10	8.8	8.7	3.6e-18	0.98	0.04	0.96	FALSE
28	GTEx	Whole Blood	ULK4	0.23	0.12	enet	35	0.18	5.1e-16	8.7	8.6	7.2e-18	0.91	0.13	0.87	FALSE
12	GTEx	Brain Putamen basal ganglia	ULK4	0.53	0.39	lasso	10	0.34	7.3e-09	8.7	8.6	9.2e-18	0.97	0.36	0.63	FALSE
20	GTEx	Muscle Skeletal	ULK4	0.17	0.16	lasso	8	0.20	6.1e-19	8.0	8.6	9.7e-18	0.97	0.67	0.33	FALSE
46	The Cancer Genome Atlas	Pancreatic Adenocarcinoma	ULK4	0.29	0.35	lasso	6	0.32	7.4e-14	8.1	8.6	1.1e-17	0.97	0.03	0.97	FALSE
27	GTEx	Thyroid	ULK4	0.38	0.25	lasso	7	0.30	2.4e-23	8.1	8.5	1.4e-17	0.97	0.54	0.46	FALSE
2	GTEx	Adipose Subcutaneous	ULK4	0.16	0.09	lasso	7	0.07	1.9e-06	8.1	8.5	1.5e-17	0.96	0.30	0.69	FALSE
5	GTEx	Artery Aorta	ULK4	0.45	0.45	enet	35	0.48	9.1e-30	8.1	8.4	3.0e-17	0.97	0.78	0.22	FALSE
29	METSIM	Adipose	ULK4	0.07	0.10	enet	32	0.10	1.1e-14	8.0	8.4	4.3e-17	0.96	0.05	0.95	FALSE
1	CommonMind	Brain Pre-frontal Cortex	ULK4	0.49	0.63	enet	43	0.66	4.3e-109	9.1	8.4	5.2e-17	0.98	0.02	0.98	FALSE
51	The Cancer Genome Atlas	Skin Cutaneous Melanoma	ULK4	0.32	0.16	lasso	13	0.22	1.9e-06	8.8	8.4	5.4e-17	0.98	0.05	0.94	FALSE
7	GTEx	Artery Tibial	ULK4	0.26	0.20	enet	34	0.23	5.5e-18	8.0	8.4	6.5e-17	0.96	0.45	0.55	FALSE
10	GTEx	Brain Cortex	ULK4	0.53	0.41	lasso	14	0.42	7.7e-13	8.0	8.3	6.8e-17	0.95	0.28	0.72	FALSE
26	GTEx	Stomach	ULK4	0.33	0.22	enet	21	0.27	3.0e-13	8.9	8.3	9.2e-17	0.95	0.08	0.92	FALSE
3	GTEx	Adipose Visceral Omentum	ULK4	0.15	0.15	lasso	4	0.14	6.2e-08	8.0	8.3	1.1e-16	0.96	0.33	0.67	FALSE
9	GTEx	Brain Cerebellum	ULK4	0.23	0.13	lasso	9	0.08	2.3e-03	8.1	8.3	1.1e-16	0.95	0.10	0.83	FALSE
44	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	ULK4	0.14	0.17	enet	15	0.18	1.7e-19	9.1	8.3	1.1e-16	0.98	0.02	0.98	FALSE
42	The Cancer Genome Atlas	Liver Hepatocellular Carcinoma	ULK4	0.12	0.03	blup	256	0.05	1.9e-03	8.0	8.3	1.4e-16	0.81	0.04	0.84	FALSE
24	GTEx	Skin Sun Exposed Lower leg	ULK4	0.20	0.16	enet	29	0.15	1.2e-12	8.7	8.2	2.6e-16	0.92	0.17	0.83	FALSE
25	GTEx	Spleen	ULK4	0.78	0.51	enet	39	0.50	5.4e-15	8.1	8.2	2.7e-16	0.92	0.56	0.44	FALSE
19	GTEx	Lung	TRAK1	0.07	0.01	enet	4	0.00	2.1e-01	8.7	8.1	4.9e-16	0.93	0.09	0.51	FALSE
49	The Cancer Genome Atlas	Rectum Adenocarcinoma	ULK4	0.29	0.23	blup	258	0.22	6.7e-06	8.8	8.1	5.9e-16	0.92	0.04	0.94	FALSE
30	ROSMAP	Brain Pre-frontal Cortex	ULK4	0.14	0.19	enet	17	0.20	5.4e-25	8.0	8.0	9.9e-16	0.94	0.19	0.81	FALSE
14	GTEx	Cells Transformed fibroblasts	ULK4	0.54	0.38	enet	79	0.58	3.7e-53	9.1	8.0	1.3e-15	0.94	0.03	0.97	FALSE
53	The Cancer Genome Atlas	Testicular Germ Cell Tumors	ULK4	0.14	0.06	enet	24	0.10	1.6e-04	8.6	8.0	1.5e-15	0.89	0.03	0.93	FALSE
11	GTEx	Brain Frontal Cortex BA9	ULK4	0.51	0.30	enet	34	0.37	1.1e-10	8.0	7.8	4.9e-15	0.88	0.41	0.58	FALSE
6	GTEx	Artery Coronary	ULK4	0.23	0.18	lasso	12	0.15	8.0e-06	7.2	7.7	1.9e-14	0.90	0.10	0.87	FALSE
4	GTEx	Adrenal Gland	ULK4	0.19	0.09	enet	26	0.12	4.1e-05	8.0	7.6	3.2e-14	0.91	0.11	0.85	FALSE
8	GTEx	Brain Caudate basal ganglia	ULK4	0.26	0.09	lasso	4	0.01	1.6e-01	7.2	7.5	6.2e-14	0.89	0.12	0.39	FALSE
55	The Cancer Genome Atlas	Uterine Corpus Endometrial Carcinoma	ULK4	0.23	0.15	enet	14	0.18	9.9e-06	8.8	7.4	1.8e-13	0.88	0.05	0.94	FALSE
23	GTEx	Skin Not Sun Exposed Suprapubic	ULK4	0.12	0.00	lasso	5	0.00	2.3e-01	8.6	6.7	1.9e-11	0.80	0.06	0.68	FALSE
34	The Cancer Genome Atlas	Cervical Squamous Cell Carcinoma	ULK4	0.16	0.16	enet	14	0.15	8.0e-08	8.0	6.6	4.1e-11	0.81	0.05	0.95	FALSE