Best TWAS P=1.45e-08 · Best GWAS P=2.52e-10 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | ERAP1 | 0.31 | 0.17 | lasso | 9 | 0.22 | 6.5e-18 | -4.5 | -5.4 | 6.2e-08 | 0.69 | 0.94 | 0.06 | FALSE |
2 | GTEx | Adipose Visceral Omentum | ERAP1 | 0.23 | 0.14 | lasso | 4 | 0.15 | 2.2e-08 | -5.2 | -5.1 | 2.9e-07 | 0.74 | 0.70 | 0.29 | TRUE |
3 | GTEx | Breast Mammary Tissue | ERAP1 | 0.21 | 0.11 | lasso | 5 | 0.12 | 1.7e-06 | -5.0 | -5.2 | 2.0e-07 | 0.74 | 0.19 | 0.79 | FALSE |
4 | GTEx | Esophagus Gastroesophageal Junction | AC008865.1 | 0.15 | 0.11 | lasso | 11 | 0.13 | 1.6e-05 | 4.2 | 5.2 | 2.0e-07 | -0.31 | 0.19 | 0.05 | TRUE |
5 | GTEx | Nerve Tibial | ERAP1 | 0.39 | 0.23 | enet | 32 | 0.26 | 1.1e-18 | -4.5 | -5.7 | 1.5e-08 | 0.63 | 0.98 | 0.02 | TRUE |
6 | GTEx | Spleen | ERAP1 | 0.47 | 0.15 | lasso | 11 | 0.31 | 1.0e-08 | -4.2 | -5.2 | 1.7e-07 | 0.37 | 0.37 | 0.20 | FALSE |
7 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ERAP1 | 0.19 | 0.16 | blup | 130 | 0.23 | 1.0e-19 | -4.5 | -5.6 | 2.6e-08 | 0.72 | 0.98 | 0.02 | FALSE |
8 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | ERAP1 | 0.42 | 0.32 | blup | 131 | 0.43 | 1.0e-22 | -4.5 | -5.2 | 2.3e-07 | 0.71 | 0.89 | 0.11 | TRUE |
9 | The Cancer Genome Atlas | Esophageal Carcinoma | ERAP1 | 0.24 | 0.09 | blup | 130 | 0.14 | 4.6e-05 | -4.5 | -5.3 | 1.4e-07 | 0.71 | 0.07 | 0.84 | TRUE |
10 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ERAP1 | 0.39 | 0.30 | lasso | 9 | 0.37 | 9.0e-44 | -4.2 | -5.2 | 1.7e-07 | 0.67 | 0.99 | 0.00 | TRUE |