TWAS
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Usage
Models
Genes
Traits
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Traits
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Past tobacco smoking
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chr7:2,646,223-5,003,373
Best TWAS P=4.49e-10 · Best GWAS P=4.61e-11 conditioned to 0.0271
3M
3.5M
4M
4.5M
5M
0
2
4
6
8
10
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Esophagus Muscularis
SDK1
0.08
0.03
lasso
5
0.02
1.1e-02
6.4
-6.2
4.5e-10
0.90
0.05
0.94
TRUE
3
GTEx
Muscle Skeletal
SDK1
0.13
0.02
lasso
4
0.03
1.4e-03
5.9
-5.7
9.7e-09
0.90
0.09
0.90
FALSE
1
GTEx
Adipose Subcutaneous
SDK1
0.18
0.12
lasso
8
0.14
9.4e-12
5.9
-5.7
1.0e-08
0.90
0.11
0.89
FALSE
4
METSIM
Adipose
SDK1
0.09
0.07
lasso
15
0.11
3.9e-16
-6.1
-5.4
7.5e-08
0.75
0.08
0.92
FALSE