TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
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Past tobacco smoking
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chr2:47,224,927-48,727,280
Best TWAS P=1.52e-07 · Best GWAS P=8.57e-07 conditioned to 0.0202
47.2M
47.4M
47.6M
47.8M
48M
48.2M
48.4M
48.6M
48.8M
0
1
2
3
4
5
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Thyroid Carcinoma
MSH6
0.11
0.06
enet
6
0.12
5.3e-12
4.1
5.2
1.5e-07
0.58
0.01
0.94
TRUE
1
GTEx
Thyroid
MSH6
0.15
0.17
enet
12
0.16
3.5e-12
4.1
5.2
2.4e-07
0.58
0.06
0.84
FALSE