TWAS
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Models
Genes
Traits
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Traits
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Alcohol intake frequency.
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chr4:2,389,800-3,943,984
Best TWAS P=1.48e-09 · Best GWAS P=8.58e-11 conditioned to 0.000524
2.4M
2.6M
2.8M
3M
3.2M
3.4M
3.6M
3.8M
4M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
C4orf44
0.03
0.02
blup
42
0.02
8.0e-04
-4.6
6.0
1.5e-09
0.63
0.27
0.25
TRUE
3
The Cancer Genome Atlas
Lung Adenocarcinoma
C4orf44
0.03
0.04
lasso
4
0.05
2.9e-06
-4.6
5.6
2.1e-08
0.62
0.52
0.41
FALSE
1
GTEx
Muscle Skeletal
HTT
0.22
0.02
lasso
9
0.06
1.3e-06
-5.3
-5.4
8.0e-08
-0.61
0.44
0.42
FALSE
5
The Cancer Genome Atlas
Thyroid Carcinoma
C4orf44
0.15
0.20
lasso
4
0.20
2.9e-19
-5.1
5.2
1.9e-07
0.41
0.50
0.50
FALSE
4
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
C4orf44
0.03
0.04
lasso
1
0.03
1.0e-04
-5.2
5.2
2.5e-07
0.34
0.36
0.56
FALSE