Best TWAS P=1.68e-13 · Best GWAS P=4.23e-13 conditioned to 1.16e-14
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.08 | lasso | 2 | 0.07 | 6.8e-09 | 7.1 | 7.1 | 1.0e-12 | -0.07 | 0.03 | 0.97 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | MTOR | 0.13 | 0.15 | lasso | 4 | 0.15 | 5.6e-18 | 6.7 | 6.6 | 3.6e-11 | -0.06 | 0.15 | 0.85 | FALSE |
3 | GTEx | Adipose Subcutaneous | EXOSC10 | 0.17 | 0.00 | lasso | 3 | 0.00 | 1.8e-01 | 6.9 | 7.0 | 1.8e-12 | -0.06 | 0.03 | 0.34 | FALSE |
4 | GTEx | Adipose Visceral Omentum | RP4-635E18.7 | 0.19 | 0.08 | lasso | 6 | 0.05 | 9.0e-04 | 7.1 | 6.2 | 6.3e-10 | -0.05 | 0.03 | 0.94 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | EXOSC10 | 0.23 | 0.10 | lasso | 3 | 0.12 | 6.4e-04 | 6.6 | 6.8 | 1.1e-11 | -0.09 | 0.02 | 0.87 | FALSE |
6 | GTEx | Brain Cerebellum | EXOSC10 | 0.33 | 0.16 | lasso | 6 | 0.18 | 3.8e-06 | 6.9 | 6.9 | 5.1e-12 | -0.05 | 0.04 | 0.95 | FALSE |
7 | GTEx | Brain Cerebellum | RP4-635E18.7 | 0.17 | 0.17 | lasso | 5 | 0.09 | 1.3e-03 | 6.9 | 6.8 | 1.1e-11 | -0.06 | 0.04 | 0.90 | FALSE |
8 | GTEx | Brain Cortex | RP4-635E18.7 | 0.17 | 0.05 | lasso | 4 | 0.07 | 6.4e-03 | 6.7 | 6.8 | 1.2e-11 | -0.08 | 0.06 | 0.66 | FALSE |
9 | GTEx | Cells EBV-transformed lymphocytes | PGD | 0.17 | 0.14 | lasso | 6 | 0.08 | 1.7e-03 | 4.8 | 5.2 | 2.2e-07 | -0.08 | 0.23 | 0.41 | FALSE |
10 | GTEx | Lung | EXOSC10 | 0.11 | 0.07 | lasso | 4 | 0.05 | 1.2e-04 | 6.9 | 6.6 | 3.5e-11 | -0.05 | 0.06 | 0.94 | FALSE |
11 | GTEx | Stomach | RP4-635E18.7 | 0.13 | 0.06 | enet | 25 | 0.03 | 8.8e-03 | 6.0 | 5.1 | 2.9e-07 | -0.03 | 0.04 | 0.87 | FALSE |
12 | GTEx | Thyroid | RP4-635E18.7 | 0.07 | 0.02 | lasso | 2 | 0.01 | 5.5e-02 | 6.9 | 6.5 | 6.1e-11 | -0.04 | 0.04 | 0.77 | FALSE |
13 | GTEx | Whole Blood | MTOR | 0.16 | 0.06 | enet | 18 | 0.07 | 5.1e-07 | 6.3 | 5.5 | 3.9e-08 | -0.03 | 0.45 | 0.55 | FALSE |
14 | METSIM | Adipose | EXOSC10 | 0.05 | 0.06 | lasso | 1 | 0.05 | 3.5e-08 | 5.6 | 5.6 | 1.8e-08 | -0.07 | 0.05 | 0.95 | FALSE |
15 | METSIM | Adipose | MTOR | 0.04 | 0.02 | bslmm | 434 | 0.02 | 1.5e-04 | 6.7 | 6.6 | 4.1e-11 | -0.07 | 0.08 | 0.91 | FALSE |
16 | NTR | Blood | KIF1B | 0.11 | 0.08 | enet | 11 | 0.09 | 3.7e-28 | 6.3 | 5.3 | 9.2e-08 | -0.04 | 0.00 | 1.00 | TRUE |
17 | ROSMAP | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.06 | lasso | 2 | 0.06 | 4.9e-08 | 7.1 | 7.0 | 2.7e-12 | -0.06 | 0.03 | 0.97 | FALSE |
18 | ROSMAP | Brain Pre-frontal Cortex | MTOR | 0.07 | 0.05 | bslmm | 423 | 0.04 | 2.0e-06 | 6.7 | 7.4 | 1.7e-13 | -0.06 | 0.18 | 0.82 | TRUE |
19 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MTOR | 0.02 | 0.02 | blup | 54 | 0.02 | 5.4e-03 | 7.1 | 7.0 | 2.7e-12 | -0.08 | 0.02 | 0.88 | FALSE |
20 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MTOR | 0.03 | 0.01 | blup | 54 | 0.02 | 5.9e-03 | 7.1 | 6.5 | 6.1e-11 | -0.06 | 0.03 | 0.72 | FALSE |
21 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | MASP2 | 0.05 | 0.03 | blup | 30 | 0.04 | 6.0e-03 | 2.2 | -6.1 | 1.3e-09 | 0.06 | 0.02 | 0.58 | FALSE |
22 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | H6PD | 0.31 | 0.06 | blup | 64 | 0.14 | 3.8e-06 | 4.4 | -5.8 | 5.5e-09 | -0.04 | 0.02 | 0.76 | TRUE |