TWAS
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Models
Genes
Traits
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Traits
:
Comparative height size at age 10
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chr10:80,443,273-81,901,722
Best TWAS P=7.15e-18 · Best GWAS P=8.5e-17 conditioned to 0.00961
80.4M
80.6M
80.8M
81M
81.2M
81.4M
81.6M
81.8M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Adipose Subcutaneous
ZCCHC24
0.12
0.01
lasso
6
0.03
3.4e-03
7.848
8.6
7.1e-18
0.78
0.01
0.95
TRUE
5
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
ZCCHC24
0.07
0.05
enet
9
0.04
6.7e-05
7.349
7.6
2.6e-14
0.95
0.00
1.00
FALSE
4
The Cancer Genome Atlas
Bladder Urothelial Carcinoma
ZCCHC24
0.06
0.00
blup
89
0.01
6.2e-02
2.669
7.2
5.9e-13
0.41
0.01
0.12
FALSE
2
GTEx
Skin Sun Exposed Lower leg
ZCCHC24
0.09
0.00
enet
18
0.00
2.3e-01
0.449
6.6
4.8e-11
0.43
0.03
0.59
FALSE
3
GTEx
Skin Sun Exposed Lower leg
RP11-342M3.5
0.08
0.00
enet
28
0.01
7.3e-02
0.044
5.2
1.7e-07
0.30
0.05
0.22
FALSE