Best TWAS P=3.77e-09 · Best GWAS P=1.32e-08 conditioned to 0.793
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | D2HGDH | 0.29 | 0.12 | enet | 6 | 0.14 | 1.2e-16 | -5.7 | 5.9 | 3.8e-09 | -0.92 | 0.00 | 1.00 | TRUE |
2 | GTEx | Adipose Subcutaneous | AC114730.7 | 0.42 | 0.24 | lasso | 6 | 0.22 | 4.9e-18 | 5.0 | 5.1 | 2.9e-07 | -0.81 | 0.04 | 0.96 | FALSE |
3 | GTEx | Brain Cerebellar Hemisphere | AC114730.7 | 0.54 | 0.37 | lasso | 2 | 0.36 | 3.5e-10 | 4.8 | 5.2 | 2.2e-07 | -0.85 | 0.06 | 0.94 | FALSE |
4 | GTEx | Brain Frontal Cortex BA9 | D2HGDH | 0.42 | 0.23 | lasso | 4 | 0.26 | 1.7e-07 | 4.8 | 5.4 | 5.2e-08 | -0.90 | 0.01 | 0.98 | FALSE |
5 | GTEx | Brain Hypothalamus | AC114730.7 | 0.55 | 0.21 | enet | 17 | 0.22 | 8.6e-06 | 4.8 | 5.1 | 2.6e-07 | -0.73 | 0.06 | 0.79 | FALSE |
6 | GTEx | Breast Mammary Tissue (Male) | D2HGDH | 0.43 | 0.24 | lasso | 6 | 0.20 | 1.9e-05 | 5.0 | 5.5 | 3.8e-08 | -0.83 | 0.02 | 0.90 | FALSE |
7 | GTEx | Breast Mammary Tissue (Male) | AC114730.7 | 0.30 | 0.17 | lasso | 3 | 0.20 | 2.8e-05 | 5.0 | 5.5 | 3.4e-08 | -0.88 | 0.01 | 0.92 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | D2HGDH | 0.44 | 0.27 | lasso | 11 | 0.30 | 1.2e-22 | 4.8 | 5.5 | 4.2e-08 | -0.86 | 0.08 | 0.91 | FALSE |
9 | GTEx | Cells Transformed fibroblasts | AC114730.8 | 0.32 | 0.12 | lasso | 4 | 0.16 | 4.5e-12 | 4.8 | 5.7 | 1.5e-08 | -0.89 | 0.01 | 0.99 | FALSE |
10 | GTEx | Colon Transverse | D2HGDH | 0.48 | 0.27 | lasso | 4 | 0.25 | 2.8e-12 | 4.8 | 5.2 | 2.1e-07 | -0.80 | 0.05 | 0.94 | FALSE |
11 | GTEx | Esophagus Mucosa | AC114730.7 | 0.31 | 0.18 | enet | 6 | 0.18 | 2.3e-12 | 5.0 | 5.2 | 1.7e-07 | -0.81 | 0.06 | 0.94 | FALSE |
12 | GTEx | Muscle Skeletal | D2HGDH | 0.26 | 0.11 | lasso | 2 | 0.14 | 3.0e-13 | -5.7 | 5.7 | 1.3e-08 | -0.94 | 0.00 | 1.00 | FALSE |
13 | GTEx | Pancreas | D2HGDH | 0.48 | 0.32 | lasso | 11 | 0.31 | 1.4e-13 | 5.0 | 5.4 | 7.7e-08 | -0.74 | 0.04 | 0.95 | FALSE |
14 | GTEx | Pancreas | AC114730.8 | 0.20 | 0.15 | lasso | 3 | 0.14 | 1.7e-06 | 5.0 | 5.2 | 1.6e-07 | -0.73 | 0.03 | 0.90 | FALSE |
15 | GTEx | Testis | AC114730.8 | 0.18 | 0.04 | enet | 57 | 0.03 | 2.1e-02 | 5.0 | 5.2 | 2.0e-07 | -0.45 | 0.01 | 0.87 | FALSE |
16 | GTEx | Uterus | AC093642.3 | 0.35 | -0.01 | enet | 25 | 0.07 | 1.8e-02 | -3.0 | -5.6 | 2.6e-08 | 0.46 | 0.02 | 0.26 | TRUE |
17 | GTEx | Whole Blood | D2HGDH | 0.12 | 0.08 | lasso | 3 | 0.08 | 5.7e-08 | 4.8 | 5.1 | 2.9e-07 | -0.81 | 0.05 | 0.95 | FALSE |
18 | GTEx | Whole Blood | AC114730.7 | 0.11 | 0.08 | lasso | 3 | 0.08 | 4.1e-08 | 5.0 | 5.2 | 1.9e-07 | -0.80 | 0.04 | 0.96 | FALSE |
19 | METSIM | Adipose | PDCD1 | 0.05 | 0.00 | blup | 171 | 0.02 | 1.9e-03 | -5.7 | -5.3 | 1.4e-07 | 0.44 | 0.00 | 0.91 | FALSE |
20 | ROSMAP | Brain Pre-frontal Cortex | D2HGDH | 0.44 | 0.33 | lasso | 6 | 0.35 | 2.1e-46 | 4.8 | 5.4 | 5.6e-08 | -0.74 | 0.09 | 0.90 | FALSE |
21 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | D2HGDH | 0.06 | 0.02 | blup | 28 | 0.04 | 1.3e-05 | -5.7 | 5.4 | 5.4e-08 | -0.86 | 0.00 | 1.00 | FALSE |