84 significantly associated models · 24 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 102118712 | 103767612 | 4 | 1 | 8.1e-23 | 1.6e-17 | 1.3e-01 | 97 | IL1RL1 |
2 | 2 | 241978472 | 243048760 | 5 | 2 | 3.8e-09 | 1.3e-08 | 7.9e-01 | 100 | AC093642.3 D2HGDH |
3 | 4 | 122842267 | 123530993 | 1 | 1 | 1.2e-07 | 3.2e-07 | 7.5e-04 | 56 | KIAA1109 |
4 | 9 | 5833337 | 7345304 | 1 | 1 | 2.2e-10 | 7.0e-21 | 2.1e-12 | 44 | GLDC |
5 | 13 | 40440805 | 41928314 | 1 | 1 | 3.0e-07 | 1.4e-05 | 7.7e-01 | 100 | FOXO1 |
6 | 15 | 67111296 | 67736023 | 1 | 1 | 7.8e-09 | 4.6e-11 | 1.5e-03 | 77 | SMAD3 |
7 | 17 | 37083464 | 39048774 | 11 | 1 | 1.7e-14 | 3.1e-14 | 1.0e+00 | 100 | ORMDL3 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Nucleus accumbens basal ganglia | 1 | 0.116 | 1.5 |
GTEx | Brain Cortex | 0 | 0.000 | 1.4 |
GTEx | Brain Frontal Cortex BA9 | 1 | 0.108 | 1.4 |
GTEx | Brain Putamen basal ganglia | 0 | 0.000 | 1.4 |
GTEx | Cells Transformed fibroblasts | 3 | 0.071 | 1.4 |
GTEx | Spleen | 2 | 0.142 | 1.4 |
NTR | Blood | 3 | 0.125 | 1.4 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 1 | 0.060 | 1.4 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 1 | 0.049 | 1.4 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 0 | 0.000 | 1.4 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 2 | 0.120 | 1.4 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 2 | 0.289 | 1.4 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 0 | 0.000 | 1.4 |
GTEx | Adipose Subcutaneous | 1 | 0.029 | 1.3 |
GTEx | Adipose Visceral Omentum | 0 | 0.000 | 1.3 |
GTEx | Adrenal Gland | 0 | 0.000 | 1.3 |
GTEx | Artery Aorta | 0 | 0.000 | 1.3 |
GTEx | Artery Tibial | 0 | 0.000 | 1.3 |
GTEx | Brain Caudate basal ganglia | 0 | 0.000 | 1.3 |
GTEx | Brain Cerebellar Hemisphere | 1 | 0.067 | 1.3 |
GTEx | Brain Cerebellum | 0 | 0.000 | 1.3 |
GTEx | Brain Hypothalamus | 1 | 0.169 | 1.3 |
GTEx | Breast Mammary Tissue | 1 | 0.051 | 1.3 |
GTEx | Breast Mammary Tissue (Male) | 2 | 0.168 | 1.3 |
GTEx | Colon Sigmoid | 0 | 0.000 | 1.3 |
GTEx | Colon Transverse | 4 | 0.194 | 1.3 |
GTEx | Esophagus Gastroesophageal Junction | 0 | 0.000 | 1.3 |
GTEx | Esophagus Mucosa | 3 | 0.090 | 1.3 |
GTEx | Esophagus Muscularis | 1 | 0.031 | 1.3 |
GTEx | Heart Atrial Appendage | 2 | 0.127 | 1.3 |
GTEx | Lung | 2 | 0.070 | 1.3 |
GTEx | Muscle Skeletal | 2 | 0.069 | 1.3 |
GTEx | Nerve Tibial | 0 | 0.000 | 1.3 |
GTEx | Pancreas | 3 | 0.184 | 1.3 |
GTEx | Skin Not Sun Exposed Suprapubic | 0 | 0.000 | 1.3 |
GTEx | Skin Sun Exposed Lower leg | 1 | 0.027 | 1.3 |
GTEx | Small Intestine Terminal Ileum | 0 | 0.000 | 1.3 |
GTEx | Testis | 1 | 0.032 | 1.3 |
GTEx | Thyroid | 1 | 0.025 | 1.3 |
GTEx | Whole Blood | 5 | 0.251 | 1.3 |
METSIM | Adipose | 3 | 0.065 | 1.3 |
ROSMAP | Brain Pre-frontal Cortex | 3 | 0.068 | 1.3 |
YFS | Blood | 4 | 0.087 | 1.3 |
CommonMind | Brain Pre-frontal Cortex | 2 | 0.037 | 1.3 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 1 | 0.048 | 1.3 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.146 | 1.3 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 1 | 0.037 | 1.3 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 4 | 0.098 | 1.3 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 1 | 0.023 | 1.3 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 2 | 0.068 | 1.3 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 3 | 0.120 | 1.3 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 3 | 0.178 | 1.3 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 0 | 0.000 | 1.3 |
The Cancer Genome Atlas | Thyroid Carcinoma | 4 | 0.078 | 1.3 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 0 | 0.000 | 1.3 |
GTEx | Artery Coronary | 0 | 0.000 | 1.2 |
GTEx | Brain Hippocampus | 0 | 0.000 | 1.2 |
GTEx | Breast Mammary Tissue (Female) | 0 | 0.000 | 1.2 |
GTEx | Cells EBV-transformed lymphocytes | 0 | 0.000 | 1.2 |
GTEx | Heart Left Ventricle | 0 | 0.000 | 1.2 |
GTEx | Liver | 1 | 0.139 | 1.2 |
GTEx | Ovary | 0 | 0.000 | 1.2 |
GTEx | Pituitary | 0 | 0.000 | 1.2 |
GTEx | Prostate | 1 | 0.120 | 1.2 |
GTEx | Stomach | 0 | 0.000 | 1.2 |
GTEx | Uterus | 1 | 0.176 | 1.2 |
GTEx | Vagina | 0 | 0.000 | 1.2 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 2 | 0.045 | 1.2 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 0 | 0.000 | 1.2 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 0 | 0.000 | 1.2 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 0 | 0.000 | 1.2 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 0 | 0.000 | 1.2 |