Best TWAS P=1.82e-12 · Best GWAS P=9.41e-15 conditioned to 1.1e-07
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Subcutaneous | WNT2B | 0.10 | 0.10 | enet | 19 | 0.06 | 1.2e-05 | -4.1 | -5.1 | 3.1e-07 | -0.12 | 1.00 | 0.00 | FALSE |
| 2 | GTEx | Artery Aorta | WNT2B | 0.15 | 0.01 | enet | 7 | 0.01 | 1.0e-01 | -5.4 | -5.3 | 9.4e-08 | -0.16 | 0.24 | 0.04 | FALSE |
| 3 | GTEx | Breast Mammary Tissue (Male) | WNT2B | 0.18 | 0.07 | lasso | 6 | 0.05 | 2.3e-02 | -5.5 | -5.8 | 8.8e-09 | -0.16 | 0.08 | 0.05 | FALSE |
| 4 | GTEx | Muscle Skeletal | WNT2B | 0.06 | 0.02 | lasso | 7 | 0.03 | 9.4e-04 | -5.5 | -6.2 | 4.7e-10 | -0.14 | 0.56 | 0.02 | FALSE |
| 5 | GTEx | Nerve Tibial | CAPZA1 | 0.17 | 0.16 | lasso | 4 | 0.16 | 2.4e-11 | -5.5 | -5.3 | 1.4e-07 | -0.13 | 1.00 | 0.00 | FALSE |
| 6 | GTEx | Nerve Tibial | RP4-671G15.2 | 0.07 | 0.06 | lasso | 2 | 0.06 | 2.9e-05 | -5.5 | 5.5 | 3.0e-08 | 0.17 | 0.94 | 0.00 | FALSE |
| 7 | ROSMAP | Brain Pre-frontal Cortex | CAPZA1 | 0.05 | 0.06 | lasso | 3 | 0.06 | 1.1e-07 | -5.3 | -5.4 | 7.7e-08 | -0.16 | 1.00 | 0.00 | FALSE |
| 8 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CTTNBP2NL | 0.04 | 0.00 | blup | 53 | 0.02 | 2.1e-03 | -6.2 | -6.8 | 1.1e-11 | -0.27 | 0.03 | 0.19 | TRUE |
| 9 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | WNT2B | 0.09 | 0.02 | enet | 13 | 0.04 | 5.1e-03 | -5.4 | -6.3 | 3.2e-10 | -0.27 | 0.02 | 0.04 | FALSE |
| 10 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | WNT2B | 0.05 | 0.02 | blup | 46 | 0.05 | 4.7e-04 | -5.3 | -5.5 | 3.5e-08 | -0.30 | 0.06 | 0.10 | FALSE |
| 11 | The Cancer Genome Atlas | Thyroid Carcinoma | RHOC | 0.04 | 0.03 | enet | 9 | 0.04 | 1.4e-04 | -6.4 | -7.0 | 1.8e-12 | -0.30 | 0.01 | 0.97 | TRUE |