Best TWAS P=1.37e-09 · Best GWAS P=2.36e-09 conditioned to 0.0951
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Vagina | LINC00667 | 0.37 | 0.24 | lasso | 6 | 0.19 | 3.8e-05 | -5.6 | 5.8 | 5.1e-09 | -0.95 | 0.01 | 0.94 | FALSE |
| 2 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | LOC339290 | 0.29 | 0.10 | blup | 69 | 0.24 | 5.0e-07 | -5.6 | 6.1 | 1.4e-09 | -0.83 | 0.02 | 0.95 | TRUE |
| 3 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | C18orf18 | 0.10 | 0.12 | lasso | 3 | 0.11 | 9.9e-05 | -5.6 | 5.6 | 1.9e-08 | -0.97 | 0.01 | 0.94 | FALSE |