528 significantly associated models · 104 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 31402148 | 32762733 | 1 | 1 | 1.2e-09 | 3.2e-09 | 1.0e+00 | 100 | PEF1 |
2 | 1 | 41130424 | 42542658 | 1 | 1 | 3.4e-09 | 5.0e-10 | 2.8e-05 | 55 | FOXO6 |
3 | 1 | 43221187 | 45153116 | 5 | 2 | 7.9e-10 | 1.7e-10 | 6.0e-02 | 91 | ST3GAL3 |
4 | 1 | 71163715 | 73435171 | 1 | 1 | 1.4e-10 | 5.2e-09 | 1.2e-01 | 93 | NEGR1 |
5 | 1 | 109316076 | 110716511 | 1 | 1 | 3.0e-07 | 3.6e-08 | 1.9e-02 | 82 | SYPL2 |
6 | 1 | 201616627 | 202161644 | 1 | 1 | 5.2e-08 | 6.4e-06 | 9.2e-01 | 100 | LMOD1 |
7 | 2 | 70804467 | 72356449 | 1 | 1 | 2.8e-08 | 2.1e-08 | 1.0e+00 | 100 | ZNF638 |
8 | 2 | 72787254 | 74187703 | 2 | 2 | 3.9e-09 | 2.5e-07 | 1.9e-02 | 79 | ALMS1P FBXO41 |
9 | 2 | 99468341 | 101731705 | 2 | 2 | 1.4e-08 | 1.1e-07 | 1.2e-01 | 92 | AFF3 CHST10 |
10 | 2 | 117979194 | 119470084 | 1 | 1 | 6.8e-08 | 7.3e-06 | 1.7e-01 | 91 | CCDC93 |
11 | 2 | 161297929 | 162790882 | 1 | 1 | 5.4e-10 | 1.5e-09 | 1.0e+00 | 100 | TANK |
12 | 3 | 23234618 | 26329265 | 5 | 2 | 7.0e-08 | 9.7e-12 | 3.8e-05 | 64 | NKIRAS1 RARB |
13 | 3 | 48702606 | 50932324 | 17 | 1 | 7.5e-17 | 1.5e-16 | 1.0e+00 | 100 | UBA7 |
14 | 3 | 52148483 | 53623102 | 2 | 1 | 2.0e-07 | 6.5e-08 | 6.6e-02 | 88 | TMEM110 |
15 | 3 | 70757099 | 71880670 | 1 | 1 | 8.9e-11 | 1.9e-10 | 1.0e+00 | 100 | FOXP1 |
16 | 3 | 135806811 | 136715468 | 1 | 1 | 1.2e-07 | 1.8e-07 | 4.0e-01 | 97 | STAG1 |
17 | 4 | 17104059 | 18507692 | 1 | 1 | 8.6e-09 | 3.4e-07 | 1.4e-01 | 92 | DCAF16 |
18 | 4 | 105598022 | 107092169 | 1 | 1 | 9.6e-13 | 3.0e-14 | 2.1e-03 | 84 | PPA2 |
19 | 5 | 138933151 | 140378983 | 1 | 1 | 1.2e-07 | 3.6e-06 | 8.8e-01 | 100 | PFDN1 |
20 | 6 | 108183628 | 109704062 | 1 | 1 | 3.3e-08 | 4.6e-10 | 2.0e-03 | 76 | FOXO3 |
21 | 11 | 16343081 | 17771487 | 2 | 1 | 1.5e-07 | 4.6e-07 | 5.6e-02 | 86 | NUCB2 |
22 | 11 | 46911704 | 48559571 | 6 | 1 | 5.7e-09 | 6.5e-08 | 7.7e-01 | 100 | NUP160 |
23 | 11 | 104797451 | 106543882 | 1 | 1 | 1.7e-07 | 4.4e-08 | 7.8e-02 | 90 | GRIA4 |
24 | 12 | 122713991 | 124156897 | 1 | 1 | 2.2e-07 | 3.4e-07 | 4.0e-01 | 97 | ABCB9 |
25 | 14 | 103466633 | 104859419 | 1 | 1 | 2.7e-07 | 1.2e-07 | 1.6e-02 | 79 | RP11-73M18.8 |
26 | 16 | 27412414 | 29595483 | 23 | 1 | 1.6e-12 | 8.8e-11 | 9.2e-02 | 93 | SULT1A1 |
27 | 16 | 52772129 | 54235440 | 2 | 1 | 4.0e-10 | 5.7e-09 | 8.0e-01 | 100 | RBL2 |
28 | 17 | 34157655 | 35644076 | 4 | 1 | 9.7e-08 | 2.5e-07 | 5.0e-01 | 98 | GGNBP2 |
29 | 17 | 43315547 | 43913030 | 1 | 1 | 3.0e-07 | 2.7e-05 | 3.4e-01 | 95 | MAPT |
30 | 17 | 55903829 | 57989860 | 5 | 1 | 8.3e-09 | 2.1e-08 | 8.6e-02 | 91 | TRIM37 |
31 | 18 | 4548348 | 5945376 | 3 | 1 | 1.4e-09 | 2.4e-09 | 9.5e-02 | 92 | LOC339290 |
32 | 21 | 18271223 | 19680363 | 1 | 1 | 1.9e-07 | 2.4e-08 | 1.0e+00 | 100 | BTG3 |
33 | 22 | 39101079 | 40571499 | 2 | 2 | 3.5e-08 | 1.1e-08 | 1.0e+00 | 100 | MGAT3 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Ovary | 5 | 0.55 | 2.5 |
GTEx | Vagina | 6 | 0.94 | 2.5 |
GTEx | Brain Cortex | 9 | 0.87 | 2.4 |
GTEx | Esophagus Gastroesophageal Junction | 8 | 0.55 | 2.4 |
GTEx | Brain Putamen basal ganglia | 2 | 0.32 | 2.3 |
GTEx | Breast Mammary Tissue | 11 | 0.56 | 2.3 |
GTEx | Colon Sigmoid | 7 | 0.48 | 2.3 |
GTEx | Colon Transverse | 8 | 0.39 | 2.3 |
GTEx | Heart Atrial Appendage | 8 | 0.51 | 2.3 |
GTEx | Heart Left Ventricle | 6 | 0.39 | 2.3 |
GTEx | Small Intestine Terminal Ileum | 2 | 0.43 | 2.3 |
GTEx | Spleen | 6 | 0.43 | 2.3 |
GTEx | Stomach | 7 | 0.48 | 2.3 |
GTEx | Adipose Visceral Omentum | 7 | 0.34 | 2.2 |
GTEx | Artery Aorta | 16 | 0.54 | 2.2 |
GTEx | Brain Cerebellar Hemisphere | 7 | 0.47 | 2.2 |
GTEx | Brain Frontal Cortex BA9 | 3 | 0.32 | 2.2 |
GTEx | Brain Hippocampus | 1 | 0.19 | 2.2 |
GTEx | Brain Nucleus accumbens basal ganglia | 5 | 0.58 | 2.2 |
GTEx | Breast Mammary Tissue (Female) | 8 | 0.49 | 2.2 |
GTEx | Cells EBV-transformed lymphocytes | 4 | 0.28 | 2.2 |
GTEx | Esophagus Mucosa | 12 | 0.36 | 2.2 |
GTEx | Esophagus Muscularis | 14 | 0.43 | 2.2 |
GTEx | Liver | 2 | 0.28 | 2.2 |
GTEx | Lung | 15 | 0.52 | 2.2 |
GTEx | Muscle Skeletal | 14 | 0.48 | 2.2 |
GTEx | Pancreas | 6 | 0.37 | 2.2 |
GTEx | Skin Not Sun Exposed Suprapubic | 10 | 0.41 | 2.2 |
GTEx | Skin Sun Exposed Lower leg | 14 | 0.38 | 2.2 |
GTEx | Uterus | 1 | 0.18 | 2.2 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 4 | 0.36 | 2.2 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 3 | 0.29 | 2.2 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 2 | 0.37 | 2.2 |
GTEx | Adipose Subcutaneous | 13 | 0.37 | 2.1 |
GTEx | Artery Coronary | 5 | 0.42 | 2.1 |
GTEx | Artery Tibial | 18 | 0.48 | 2.1 |
GTEx | Brain Caudate basal ganglia | 4 | 0.43 | 2.1 |
GTEx | Brain Cerebellum | 7 | 0.35 | 2.1 |
GTEx | Brain Hypothalamus | 2 | 0.34 | 2.1 |
GTEx | Breast Mammary Tissue (Male) | 3 | 0.25 | 2.1 |
GTEx | Cells Transformed fibroblasts | 12 | 0.29 | 2.1 |
GTEx | Nerve Tibial | 13 | 0.30 | 2.1 |
GTEx | Pituitary | 3 | 0.27 | 2.1 |
GTEx | Prostate | 4 | 0.48 | 2.1 |
GTEx | Testis | 7 | 0.22 | 2.1 |
GTEx | Thyroid | 8 | 0.20 | 2.1 |
GTEx | Whole Blood | 8 | 0.40 | 2.1 |
ROSMAP | Brain Pre-frontal Cortex | 17 | 0.39 | 2.1 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 4 | 0.24 | 2.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 15 | 0.35 | 2.1 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 5 | 0.45 | 2.1 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 6 | 0.36 | 2.1 |
GTEx | Adrenal Gland | 4 | 0.27 | 2.0 |
NTR | Blood | 7 | 0.29 | 2.0 |
CommonMind | Brain Pre-frontal Cortex | 10 | 0.19 | 2.0 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 4 | 0.19 | 2.0 |
The Cancer Genome Atlas | Esophageal Carcinoma | 1 | 0.15 | 2.0 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 9 | 0.33 | 2.0 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 5 | 0.24 | 2.0 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 8 | 0.27 | 2.0 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 7 | 0.28 | 2.0 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 7 | 0.44 | 2.0 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 3 | 0.28 | 2.0 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 5 | 0.30 | 2.0 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 1 | 0.20 | 2.0 |
METSIM | Adipose | 15 | 0.33 | 1.9 |
YFS | Blood | 8 | 0.17 | 1.9 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 8 | 0.18 | 1.9 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 10 | 0.24 | 1.9 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 15 | 0.32 | 1.9 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.00 | 1.9 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 2 | 0.16 | 1.9 |
The Cancer Genome Atlas | Thyroid Carcinoma | 9 | 0.17 | 1.9 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 3 | 0.23 | 1.8 |