Best TWAS P=8.26e-09 · Best GWAS P=2.06e-08 conditioned to 0.0865
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | TRIM37 | 0.18 | 0.22 | enet | 25 | 0.24 | 6.9e-20 | -5.3 | 5.2 | 2.4e-07 | -0.87 | 0.07 | 0.93 | FALSE |
2 | GTEx | Adipose Subcutaneous | AC099850.1 | 0.04 | 0.06 | lasso | 1 | 0.05 | 5.2e-05 | -5.3 | 5.3 | 1.1e-07 | -0.89 | 0.04 | 0.95 | FALSE |
3 | GTEx | Adipose Visceral Omentum | TRIM37 | 0.19 | 0.25 | lasso | 5 | 0.25 | 3.1e-13 | -5.4 | 5.3 | 9.7e-08 | -0.90 | 0.04 | 0.96 | FALSE |
4 | GTEx | Breast Mammary Tissue | TRIM37 | 0.26 | 0.17 | enet | 33 | 0.17 | 3.7e-09 | -5.6 | 5.5 | 3.2e-08 | -0.82 | 0.04 | 0.96 | FALSE |
5 | GTEx | Breast Mammary Tissue (Female) | TRIM37 | 0.18 | 0.08 | lasso | 1 | 0.02 | 8.2e-02 | -5.6 | 5.6 | 2.1e-08 | -0.91 | 0.04 | 0.81 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | RP11-112H10.4 | 0.04 | 0.02 | lasso | 2 | 0.02 | 1.9e-02 | -5.4 | 5.3 | 1.2e-07 | -0.89 | 0.06 | 0.84 | FALSE |
7 | GTEx | Colon Transverse | TRIM37 | 0.14 | 0.15 | lasso | 6 | 0.17 | 1.5e-08 | -5.4 | 5.1 | 3.0e-07 | -0.83 | 0.05 | 0.95 | FALSE |
8 | GTEx | Esophagus Muscularis | AC099850.1 | 0.06 | 0.00 | enet | 22 | 0.00 | 1.7e-01 | -5.4 | 5.6 | 1.9e-08 | -0.84 | 0.03 | 0.83 | FALSE |
9 | GTEx | Nerve Tibial | SMG8 | 0.08 | 0.06 | lasso | 7 | 0.05 | 1.0e-04 | -5.4 | 5.3 | 1.2e-07 | -0.88 | 0.05 | 0.92 | FALSE |
10 | GTEx | Pancreas | TRIM37 | 0.08 | 0.05 | lasso | 7 | 0.02 | 3.2e-02 | -5.3 | 5.6 | 2.3e-08 | -0.86 | 0.05 | 0.84 | FALSE |
11 | GTEx | Spleen | TRIM37 | 0.13 | 0.08 | enet | 16 | 0.18 | 2.8e-05 | -5.4 | 5.8 | 8.3e-09 | -0.79 | 0.05 | 0.84 | TRUE |
12 | GTEx | Testis | TRIM37 | 0.17 | 0.23 | lasso | 6 | 0.19 | 6.3e-09 | -5.1 | -5.1 | 3.1e-07 | 0.80 | 0.10 | 0.90 | FALSE |
13 | GTEx | Whole Blood | TRIM37 | 0.12 | 0.18 | enet | 21 | 0.18 | 1.8e-16 | -5.1 | 5.3 | 1.4e-07 | -0.89 | 0.06 | 0.94 | FALSE |
14 | METSIM | Adipose | TRIM37 | 0.11 | 0.11 | bslmm | 328 | 0.12 | 2.0e-17 | -5.4 | 5.3 | 1.3e-07 | -0.86 | 0.05 | 0.95 | FALSE |
15 | NTR | Blood | TRIM37 | 0.02 | 0.03 | lasso | 4 | 0.03 | 6.4e-11 | -5.4 | 5.4 | 6.1e-08 | -0.90 | 0.06 | 0.94 | FALSE |
16 | The Cancer Genome Atlas | Soft Tissue Sarcoma | MTMR4 | 0.07 | 0.00 | blup | 40 | 0.03 | 6.6e-03 | 4.8 | -5.7 | 1.0e-08 | 0.77 | 0.01 | 0.60 | FALSE |